def __deleted(self, *arg):
"""When delete_event happens or exit menu is selected,
this method is called.
"""
running_flag = False
if self.theSession.theRunningFlag:
# stop simulation temporarily
self.theSession.stop()
running_flag = True
if self.theSession.theSession is not None:
# If there is no logger data, exit this program.
if len(self.theSession.getLoggerList()) != 0:
aMessage = 'Are you sure you want to quit?'
aTitle = 'Question'
# Popup confirm window, and check user request
aDialog = ConfirmWindow(1, aMessage, aTitle)
# ok is pressed
if aDialog.return_result() != OK_PRESSED:
if running_flag:
self.theSession.run()
return True
self.setStopState()
self.close()
self.theSession.QuitGUI()
return True
def changeSaveDirectory( self, obj ):
aSaveDirectory = self.theSaveDirectorySelection.get_filename()
self.theSaveDirectorySelection.hide()
selectedFullPNList = []
for anItem in self.getSelected():
selectedFullPNList.append( anItem[0] )
# If same directory exists.
if os.path.isdir(aSaveDirectory):
aConfirmMessage = "%s directory already exist.\n Would you like to override it?"%aSaveDirectory
confirmWindow = ConfirmWindow(1,aConfirmMessage)
if confirmWindow.return_result() == 0:
pass
else:
return None
# If same directory dose not exists.
else:
try:
os.mkdir(aSaveDirectory)
except:
aErrorMessage='couldn\'t create %s!\n'%aSaveDirectory
aWarningWindow = ConfirmWindow(0,aErrorMessage)
return None
try:
self.theSession.saveLoggerData( selectedFullPNList, aSaveDirectory, -1, -1, -1 )
except:
anErrorMessage = "Error : could not save "
aWarningWindow = ConfirmWindow(0,anErrorMessage)
return None
def __deleted(self, *arg):
"""When delete_event happens or exit menu is selected,
this method is called.
"""
running_flag = False
if self.theSession.theRunningFlag:
# stop simulation temporarily
self.theSession.stop()
running_flag = True
if self.theSession.theSession is not None:
# If there is no logger data, exit this program.
if len(self.theSession.getLoggerList()) != 0:
aMessage = "Are you sure you want to quit?"
aTitle = "Question"
# Popup confirm window, and check user request
aDialog = ConfirmWindow(1, aMessage, aTitle)
# ok is pressed
if aDialog.return_result() != OK_PRESSED:
if running_flag:
self.theSession.run()
return True
self.setStopState()
self.close()
self.theSession.QuitGUI()
return True
def openConfirmWindow(self, aMessage, aTitle, isCancel = 1 ): """ pops up a modal dialog window with aTitle (str) as its title and displaying aMessage as its message and with an OK and a Cancel button returns: True if Ok button is pressed False if cancel button is pressed """ aConfirmWindow = ConfirmWindow(isCancel, aMessage, aTitle ) return aConfirmWindow.return_result() == OK_PRESSED
def openConfirmWindow(self, aMessage, aTitle, isCancel=1):
""" pops up a modal dialog window
with aTitle (str) as its title
and displaying aMessage as its message
and with an OK and a Cancel button
returns:
True if Ok button is pressed
False if cancel button is pressed
"""
aConfirmWindow = ConfirmWindow(isCancel, aMessage, aTitle)
return aConfirmWindow.return_result() == OK_PRESSED
def __loadData(self, *arg):
"""loads model or script file
arg[0] --- ok button of FileSelection
arg[1] --- 'Model'/'Script' (str)
Return None
"""
# checks the length of argument, but this is verbose
if len(arg) < 2:
return None
aFileType = arg[1]
aFileName = self.theFileSelection.get_filename()
if os.path.isfile(aFileName):
pass
else:
aMessage = ' Error ! No such file. \n[%s]' % aFileName
self.theSession.message(aMessage)
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Error!')
self.theFileSelection.present()
return None
self.__deleteFileSelection()
self.theSession.message('Loading %s file %s\n' %
(aFileType, aFileName))
try:
if aFileType == 'Model':
self.theSession.loadModel(aFileName)
elif aFileType == 'Script':
self.theSession.loadScript(aFileName)
elif aFileType == 'SBML':
self.theSession.importSBML(aFileName)
self.theSession.updateWindows()
except:
# expants message window, when it is folded.
if self.exists():
if not (self['message_togglebutton'].get_child()).get_active():
(self['message_togglebutton'].get_child()).set_active(True)
# displays confirm window
aMessage = 'Can\'t load [%s]\nSee MessageWindow for details.' % aFileName
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Error!')
# displays message on MessageWindow
aMessage = 'Can\'t load [%s]' % aFileName
self.theSession.message(aMessage)
anErrorMessage = '\n'.join(
traceback.format_exception(sys.exc_type, sys.exc_value,
sys.exc_traceback))
self.theSession.message(anErrorMessage)
def __exportSBML(self, *arg):
# gets file name
aFileName = self.theFileSelection.get_filename()
# when the file already exists
if os.path.isfile(aFileName):
# displays confirm window
aMessage = 'Would you like to replace the existing file? \n[%s]' % aFileName
aDialog = ConfirmWindow(OKCANCEL_MODE, aMessage,
'Confirm File Overwrite')
# when canceled, does nothing
if aDialog.return_result() != OK_PRESSED:
# does nothing
return None
# when ok is pressed, overwrites it.
# deletes FileSelection
self.__deleteFileSelection()
try:
# displays save message
self.theSession.message('Export SBML file %s\n' % aFileName)
# saves Model
self.theSession.exportSBML(aFileName)
except:
# expants message window, when it is folded.
if not (self['message_togglebutton'].get_child()).get_active():
(self['message_togglebutton'].get_child()).set_active(True)
# displays confirm window
aMessage = 'Can\'t save [%s]\nSee MessageWindow for details.' % aFileName
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Error!')
# displays error message of MessageWindow
self.theSession.message('Can\'t export [%s]' % aFileName)
anErrorMessage = '\n'.join(
traceback.format_exception(sys.exc_type, sys.exc_value,
sys.exc_traceback))
self.theSession.message(anErrorMessage)
# updates
self.update()
self.theSession.updateFundamentalWindows()
def inputValue(self, *arg):
# gets text from text field.
aText = self['value_frame'].get_text().split()
if type(aText) == type([]):
if len(aText) > 0:
aText = aText[0]
else:
return None
else:
return None
# Only when the length of text > 0,
# checks type of text and set it.
if len(aText) > 0:
# Only when the value is numeric,
# the value will be set to value_frame.
try:
aValue = float(aText)
self.theSession.setEntityProperty(self.getFullPN(), aValue)
except:
ConfirmWindow.ConfirmWindow(0, 'Input numerical value.')
aValue = self.theSession.getEntityProperty(self.getFullPN())
self["value_frame"].set_text(str(aValue))
return None
else:
return None
def __setValue( self ):
#take value from list and redraw
aVarrefList = []
anIter = self.theListStore.get_iter_first()
while anIter != None:
aVarref = ["","",1, 1]
aVarref[VARREF_NAME] = self.theListStore.get_value( anIter, NAME_COLUMN )
aVarref[VARREF_FULLID] = self.theListStore.get_value( anIter, FULLID_COLUMN )
aVarref[VARREF_COEF] = self.theListStore.get_value( anIter, COEF_COLUMN )
aVarrefList.append( tuple( aVarref ) )
anIter = self.theListStore.iter_next( anIter )
aVarrefListTuple = tuple( aVarrefList )
try:
self.theSession.createEntityStub( self.theFullIDString ).setProperty( "VariableReferenceList", aVarrefListTuple )
except:
# print out traceback
import sys
import traceback
anErrorMessage = '\n'.join( traceback.format_exception( sys.exc_type,sys.exc_value,sys.exc_traceback ) )
self.theSession.message("-----An error happens.-----")
self.theSession.message(anErrorMessage)
self.theSession.message("---------------------------")
# creates and display error message dialog.
anErrorMessage = "Couldnot change variablereference"
anErrorTitle = "Error"
anErrorWindow = ConfirmWindow(OK_MODE,anErrorMessage,anErrorTitle)
self.update()
def __saveModel( self, *arg ) :
# gets file name
aFileName = self.theFileSelection.get_filename()
# when the file already exists
if os.path.isfile( aFileName ):
# displays confirm window
aMessage = 'Would you like to replace the existing file? \n[%s]' %aFileName
aDialog = ConfirmWindow(OKCANCEL_MODE,aMessage,'Confirm File Overwrite')
# when canceled, does nothing
if aDialog.return_result() != OK_PRESSED:
# does nothing
return None
# when ok is pressed, overwrites it.
# deletes FileSelection
self.__deleteFileSelection()
try:
# displays save message
self.theSession.message('Save model file %s\n' % aFileName)
# saves Model
self.theSession.saveModel( aFileName )
except:
# expants message window, when it is folded.
if not ( self['message_togglebutton'].get_child() ).get_active():
( self['message_togglebutton'].get_child() ).set_active( True )
# displays confirm window
aMessage = 'Can\'t save [%s]\nSee MessageWindow for details.' %aFileName
aDialog = ConfirmWindow(OK_MODE,aMessage,'Error!')
# displays error message of MessageWindow
self.theSession.message('Can\'t save [%s]' %aFileName)
anErrorMessage = '\n'.join( traceback.format_exception( sys.exc_type,sys.exc_value,sys.exc_traceback ) )
self.theSession.message(anErrorMessage)
# updates
self.update()
self.theSession.updateFundamentalWindows()
def __setStepSizeOrSec(self, *arg):
# gets the inputerd characters from the GtkEntry.
aNewValue = self['sec_step_entry'].get_text().strip()
try:
# converts string to float
aNewValue = float(aNewValue)
# when string can't be converted to float
except ValueError:
# displays a Confirm Window.
aMessage = "\"%s\" is not numerical value." % aNewValue
aMessage += "\nInput numerical character"
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Error!')
# sets the previous value
self['sec_step_entry'].set_text(str(self.theStepSizeOrSec))
# when string can be converted to float
else:
#check for numerical constraints
aMessage = ""
if aNewValue <= 0:
aMessage += "Input positive number.\n"
# when 'step' is selected.
if self['step_radiobutton'].get_active():
# step must be integer
if int(aNewValue) != aNewValue:
aMessage += "Input integer.\n"
# convets float to int
aNewValue = int(aNewValue)
if len(aMessage) > 0:
#aDialog = ConfirmWindow(OK_MODE,aMessage,'Error!')
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Error!')
else:
self.theStepSizeOrSec = aNewValue
def checkRun( self ):
if self.theSession.isRunning():
# displays a Confirm Window.
aMessage = "Cannot create new logger, because simulation is running.\n"
aMessage += "Please stop simulation if you want to create a logger"
aDialog = ConfirmWindow(OK_MODE,aMessage,'Warning!')
return True
return False
def openPreferences(self, *arg):
"""display the preference window
arg[0] --- self['preferences_menu']
Return None
"""
# Preference Window is not implemented yet.
# So, displays Warning Dialog
aMessage = ' Sorry ! Not implemented... [%s]\n' % '03/April/2003'
aDialog = ConfirmWindow(OK_MODE, aMessage, 'Sorry!')
def __init__(self, aDirName, aData, aPluginManager, aRoot=None):
# call constructor of superclass
OsogoPluginWindow.__init__( self, aDirName, aData, \
aPluginManager, aRoot )
aFullPNString = createFullPNString(self.getFullPN())
aValue = self.theSession.getEntityProperty(aFullPNString)
if not operator.isNumberType(aValue):
aMessage = "Error: (%s) is not numerical data" % aFullPNString
self.thePluginManager.printMessage(aMessage)
aDialog = ConfirmWindow.ConfirmWindow(0, aMessage, 'Error!')
raise TypeError(aMessage)
def __cellEdited( self, *args ):
aNewValue = args[2]
aPath = args[1]
anIter = self.theListStore.get_iter_from_string( aPath )
column = args[3]
if column == COEF_COLUMN:
#check whether it is integer
if not operator.isNumberType( aNewValue):
anErrorWindow = ConfirmWindow(OK_MODE,"Coefficient should be numeric.","Error")
return
self.theListStore.set_value( anIter, column, aNewValue )
self.__setValue()
def changeTitle(self, *arg):
aNewTitle = self["title_entry"].get_text()
aNewTitle = aNewTitle.strip()
if len(aNewTitle) == 0:
anErrorMessage = '\nError text field is blank.!\n'
#self.theSession.message( anErrorMessage )
aWarningWindow = ConfirmWindow(OK_MODE, anErrorMessage, "!")
return None
aTitle = self.thePluginMap[str(self.theSelectedPluginFrame)].getTitle()
self.thePluginManager.editInstanceTitle(aTitle, aNewTitle)
self.theSession.updateWindows()
def __updateProperty(self, renderer, path, aValue, *kwarg):
"""updates property
Return None
"""
# --------------------------------------------------
# creates selected StepperSub
# --------------------------------------------------
iter = self['stepper_id_list'].get_selection().get_selected()[1]
aStepperID = self['stepper_id_list'].get_model().get_value(iter, 0)
aStepperStub = self.theSession.createStepperStub(aStepperID)
# gets selected property row
aPropertyModel = self['property_list'].get_model()
iter = aPropertyModel.get_iter(path)
# -----------------------------------------------------------
# get a property name from property list
# -----------------------------------------------------------
aPropertyName = aPropertyModel.get_value(iter, PROPERTY_INDEX)
# converts value type
anOldValue = aStepperStub.getProperty(aPropertyName)
# ---------------------------------------------------
# checks float and int type of inputted value
# does not check str. ( not needed )
# ---------------------------------------------------
# float
if type(anOldValue) == float:
try:
aValue = float(aValue)
except:
# displays confirm window
anErrorMessage = "Input float value."
aDialog = ConfirmWindow(
OK_MODE, "Can't set property!\n" + anErrorMessage,
'Error!')
return None
# int
if type(anOldValue) == int:
try:
aValue = int(aValue)
except:
# displays confirm window
anErrorMessage = "Input int value."
aDialog = ConfirmWindow(
OK_MODE, "Can't set property!\n" + anErrorMessage,
'Error!')
return None
# sets new value
try:
aStepperStub.setProperty(aPropertyName, aValue)
aPropertyModel.set_value(iter, VALUE_INDEX, aValue)
except:
# displays error message to MessageWindow
anErrorMessage = '\n'.join(
traceback.format_exception(sys.exc_type, sys.exc_value,
sys.exc_traceback))
self.theSession.message(anErrorMessage)
# displays confirm window
anErrorMessage = "See MessageWindow for details."
aDialog = ConfirmWindow(OK_MODE, aMessage,
"Can't set property!\n" + anErrorMessage)
return False
# when to set property is succeeded,
else:
# refreshs self['property_list']
self.update()
return True
