def tests_hiv_result8(self):
"""Other record confirms a verbal positive as evidence of HIV infection not on ART."""
self.startup()
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=NOT_REQUIRED).count() == 1)
site_rule_groups.autodiscover()
HivTestingHistoryFactory(subject_visit=self.subject_visit_male,
verbal_hiv_result='NEG',
has_record='No',
other_record='No')
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='hivresult',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='pima',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Venous (HIV)',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='ELISA',
entry_status=NOT_REQUIRED).count() == 1)
site_rule_groups._registry = {}
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
def __init__(self):
self._model = None
self._fields = None
self._model_admin = None
self._model_fields = None
self._visit_definition = None
admin.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.mapper = site_mappers.get_current_mapper()
# self.app_config.prep_survey_for_tests()
self.community = 'test_community'
plot = PlotFactory(community=self.community, household_count=1, status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure, gender='M',
age_in_years=self.male_age_in_years, first_name=self.male_first_name,
initials=self.male_initials
)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes'
)
self.subject_consent_male = SubjectConsentFactory(household_member=self.household_member_male_T0, study_site=self.study_site, gender='M', dob=self.male_dob, first_name=self.male_first_name, initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(subject_identifier=self.subject_consent_male.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(registered_subject=self.registered_subject_male, visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(appointment=self.appointment_male_T0, household_member=self.household_member_male_T0)
SubjectLocatorFactory(registered_subject=self.subject_visit_male_T0.appointment.registered_subject, subject_visit=self.subject_visit_male_T0)
self.household_member_T1 = None
self.update_call_list_class = UpdateCallList()
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
self.community = site_mappers.get_current_mapper().map_area
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.site_code = self.study_site
self.intervention = site_mappers.get_current_mapper().intervention
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
self.survey2 = Survey.objects.get(
survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.create_baseline(household)
self.data = {
'household_member': self.household_member_male.id,
'report_datetime': datetime.today(),
'first_name': 'SETS',
'initials': 'SA',
'dob': datetime.today() + relativedelta(years=-20),
'guardian': NO,
'gender': MALE,
'has_identity': YES,
'identity': '317918515',
'identity_type': 'OMANG',
'citizen': YES,
'part_time_resident': YES,
'literacy': YES,
'guardian': YES,
'inability_to_participate': 'N/A',
'hiv_status': 'NEG',
'legal_marriage': 'N/A',
'marriage_certificate': 'N/A'
}
def startup(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
# site_visit_schedules.autodiscover()
# site_visit_schedules.build_all()
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
# try:
# site_lab_profiles.register(BcppSubjectProfile())
# except AlreadyRegisteredLabProfile:
# pass
# BcppAppConfiguration()
# site_lab_tracker.autodiscover()
# BcppSubjectVisitSchedule().build()
self.community = site_mappers.get_current_mapper().map_area
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.site_code = self.study_site
self.intervention = site_mappers.get_current_mapper().intervention
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
self.survey2 = Survey.objects.get(
survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.create_baseline(household)
self.create_annual(household)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.dashboard.subject.views import additional_requisition
from edc.map.classes import site_mappers
from edc.subject.lab_tracker.classes import site_lab_tracker
from edc.subject.rule_groups.classes import site_rule_groups
from edc.subject.visit_schedule.classes import site_visit_schedules
from bhp066.apps.bcpp.app_configuration.classes import bcpp_app_configuration
site_lab_profiles.autodiscover()
dajaxice_autodiscover()
site_mappers.autodiscover()
bcpp_app_configuration.prepare()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
site_lab_tracker.autodiscover()
data_manager.prepare()
site_sections.autodiscover()
site_sections.update_section_lists()
admin.autodiscover()
site_mappers.get_current_mapper().verify_survey_dates()
for model in get_models():
try:
django_databrowse.site.register(model)
except:
pass
APP_NAME = settings.APP_NAME
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey_T0 = Survey.objects.get(survey_slug='bcpp-year-1')
survey_T1 = Survey.objects.get(survey_slug='bcpp-year-2')
survey_T2 = Survey.objects.get(survey_slug='bcpp-year-3')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T0)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T1)
self.household_structure_y3 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y3)
HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
male_dob = date.today() - relativedelta(years=25)
male_age_in_years = 25
male_first_name = 'ERIK'
male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456467')
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials,
registered_subject=registered_subject)
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456468')
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=male_age_in_years,
first_name=male_first_name,
initials=male_initials,
registered_subject=registered_subject)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_male_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.household_member_male_T0.save()
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen=YES,
dob=female_dob,
guardian=NO,
initials=self.household_member_female_T0.initials,
part_time_resident=YES)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen=YES,
dob=male_dob,
guardian=NO,
initials=self.household_member_male_T0.initials,
part_time_resident=YES)
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
confirm_identity='101129811',
identity='101129811',
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=male_dob,
first_name=male_first_name,
initials=male_initials)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure.household,
survey=survey_T0,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T2 = EnumerationHelper(
self.household_structure.household, survey_T0, survey_T1)
enumeration_helper_T2.add_members_from_survey()
self.household_member_female = HouseholdMember.objects.get(
internal_identifier=self.household_member_female_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.household_member_male = HouseholdMember.objects.get(
internal_identifier=self.household_member_male_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y2.household,
survey=survey_T1,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T3 = EnumerationHelper(
self.household_structure.household, survey_T1, survey_T2)
enumeration_helper_T3.add_members_from_survey()
self.household_member_female_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_female.
internal_identifier,
household_structure__survey=survey_T2)
self.household_member_male_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_male.internal_identifier,
household_structure__survey=survey_T2)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y3.household,
survey=survey_T2,
enumerated=True,
enrolled=True).count(), 1)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.appointment_female_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T2')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.subject_visit_female_T2 = SubjectVisitFactory(
appointment=self.appointment_female_T2,
household_member=self.household_member_female_T2)
self.appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T1')
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_male_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T2')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_male = SubjectVisitFactory(
appointment=self.appointment_male,
household_member=self.household_member_male)
self.subject_visit_male_T2 = SubjectVisitFactory(
appointment=self.appointment_male_T2,
household_member=self.household_member_male_T2)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='14')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
HouseholdMemberFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials)
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
Quota.objects.create(app_label='bcpp_subject',
model_name='PimaVl',
target=1,
expires_datetime=timezone.now() +
timedelta(days=1))
self.assertEqual(1, Quota.objects.all().count())
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}
from edc.data_manager.classes import data_manager
from edc.dashboard.section.classes import site_sections
from edc.lab.lab_profile.classes import site_lab_profiles
from edc.dashboard.subject.views import additional_requisition
from edc.subject.lab_tracker.classes import site_lab_tracker
from edc.subject.rule_groups.classes import site_rule_groups
from edc.subject.visit_schedule.classes import site_visit_schedules
from apps.hnscc.app_configuration.classes import HnsccAppConfiguration
site_lab_profiles.autodiscover()
dajaxice_autodiscover()
HnsccAppConfiguration().prepare()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
site_rule_groups.autodiscover()
site_lab_tracker.autodiscover()
data_manager.prepare()
site_sections.autodiscover()
site_sections.update_section_lists()
admin.autodiscover()
for model in get_models():
try:
django_databrowse.site.register(model)
except:
pass
APP_NAME = settings.APP_NAME
urlpatterns = patterns(
def tests_hiv_result10(self):
"""Other record confirms a verbal positive as evidence of HIV infection not on ART."""
self.startup()
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=NOT_REQUIRED).count() == 1)
site_rule_groups.autodiscover()
HivTestingHistoryFactory(subject_visit=self.subject_visit_male,
verbal_hiv_result='NEG',
has_record='No',
other_record='No')
panel = Panel.objects.get(name='Microtube')
SubjectRequisitionFactory(
subject_visit=self.subject_visit_male,
site=self.site_code,
panel=panel,
aliquot_type=AliquotType.objects.get(alpha_code='WB'))
HivResultFactory(
subject_visit=self.subject_visit_male,
hiv_result='POS',
hiv_result_datetime=datetime.today(),
)
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='hicenrollment',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='hivresult',
entry_status=KEYED).count() == 1)
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='pima',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=KEYED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=REQUIRED).count() == 1)
site_rule_groups._registry = {}
def tests_hiv_result7(self):
"""Other record confirms a verbal positive as evidence of HIV infection not on ART."""
self.startup()
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=NOT_REQUIRED).count() == 1)
site_rule_groups.autodiscover()
today_date = date.today()
last_year_date = today_date - timedelta(days=365)
HivTestingHistoryFactory(subject_visit=self.subject_visit_male,
verbal_hiv_result='POS',
has_record='No',
other_record='Yes')
subject_referral_helper = SubjectStatusHelper(self.subject_visit_male)
self.assertEqual('POS', subject_referral_helper.hiv_result)
self.assertEqual(False, subject_referral_helper.new_pos)
self.assertTrue(subject_referral_helper.on_art is None)
HivCareAdherenceFactory(subject_visit=self.subject_visit_male,
on_arv='Yes',
arv_evidence='No',
ever_taken_arv='Yes')
subject_referral_helper = SubjectStatusHelper(self.subject_visit_male)
self.assertEqual('POS', subject_referral_helper.hiv_result)
self.assertFalse(subject_referral_helper.new_pos)
self.assertTrue(subject_referral_helper.on_art)
hiv_result_documentation = HivResultDocumentationFactory(
subject_visit=self.subject_visit_male,
result_recorded='POS',
result_date=last_year_date,
result_doc_type='ART Prescription')
subject_referral_helper = SubjectStatusHelper(self.subject_visit_male)
self.assertEqual('POS', subject_referral_helper.hiv_result)
self.assertFalse(subject_referral_helper.new_pos)
self.assertTrue(subject_referral_helper.on_art)
self.assertEqual(hiv_result_documentation.result_date,
subject_referral_helper.hiv_result_datetime.date())
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='hivresult',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
ScheduledEntryMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
entry__model_name='pima',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Microtube',
entry_status=NOT_REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Research Blood Draw',
entry_status=REQUIRED).count() == 1)
self.assertTrue(
RequisitionMetaData.objects.filter(
appointment=self.subject_visit_male.appointment,
lab_entry__requisition_panel__name='Viral Load',
entry_status=REQUIRED).count() == 1)
site_rule_groups._registry = {}