class TestSiteVisitSchedule(TestCase):
def setUp(self):
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
def test_register_no_schedules(self):
site_visit_schedules._registry = {}
self.assertRaises(SiteVisitScheduleError,
site_visit_schedules.register, self.visit_schedule)
def test_already_registered(self):
site_visit_schedules._registry = {}
schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule.add_schedule(schedule)
site_visit_schedules.register(self.visit_schedule)
self.assertRaises(
AlreadyRegisteredVisitSchedule,
site_visit_schedules.register,
self.visit_schedule,
)
def test_schedule_bad_crf_model(self):
site_visit_schedules._registry = {}
visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
crfs = FormsCollection(
Crf(show_order=10, model="blah.CrfOne"),
Crf(show_order=20, model="blah.CrfTwo"),
Crf(show_order=30, model="blah.CrfThree"),
)
visit = Visit(
code="1000",
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
facility_name="default",
crfs=crfs,
timepoint=1,
)
schedule.add_visit(visit)
visit_schedule.add_schedule(schedule)
site_visit_schedules.register(visit_schedule)
errors = visit_schedule_check(app_configs=django_apps.get_app_configs())
self.assertEqual(len(errors), 1)
self.assertEqual("edc_visit_schedule.visits", errors[0].id)
def setUp(self):
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
import_holidays()
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
visit = Visit(
code="1000",
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
timepoint=1,
)
self.schedule.add_visit(visit)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_reference_configs.registry = {}
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
self.subject_identifier = self.subject_consent.subject_identifier
def test_visit_schedule_repr(self):
"""Asserts repr evaluates correctly."""
v = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.deathreport",
death_report_model="visit_schedule_app.deathreport",
)
self.assertTrue(v.__repr__())
def test_visit_schedule_validates(self):
visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
errors = visit_schedule.check()
if errors:
self.fail("visit_schedule.check() unexpectedly failed")
def setUp(self):
import_holidays()
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule2 = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.onscheduletwo",
offschedule_model="visit_schedule_app.offscheduletwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.onschedulethree",
offschedule_model="visit_schedule_app.offschedulethree",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
def test_visit_schedule_ok(self):
site_visit_schedules._registry = {}
visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
visit_schedule.add_schedule(schedule)
site_visit_schedules.register(visit_schedule)
errors = visit_schedule_check(app_configs=django_apps.get_app_configs())
self.assertEqual(len(errors), 0)
def setUp(self):
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule_two = VisitSchedule(
name="visit_schedule_two",
verbose_name="Visit Schedule Two",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule_two = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.onscheduletwo",
offschedule_model="visit_schedule_app.offscheduletwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule_two.add_schedule(self.schedule_two)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_visit_schedules.register(self.visit_schedule_two)
schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
schedule.add_visit(visit0)
schedule.add_visit(visit1)
schedule.add_visit(visit2)
schedule.add_visit(visit3)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
visit_schedule.add_schedule(schedule)
# visit_schedule2
schedule2 = Schedule(
name="schedule2",
onschedule_model="visit_schedule_app.onschedule2",
offschedule_model="visit_schedule_app.offschedule2",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
schedule2.add_visit(visit3)
visit3 = Visit(
code="4000",
title="Day 4",
timepoint=3,
rbase=relativedelta(days=3),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
)
schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
schedule.add_visit(visit0)
schedule.add_visit(visit1)
schedule.add_visit(visit2)
schedule.add_visit(visit3)
visit_schedule = VisitSchedule(
name="visit_schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
visit_schedule.add_schedule(schedule)
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
site_visit_schedules._registry = {}
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.OnSchedule",
offschedule_model="visit_schedule_app.OffSchedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.OnScheduleThree",
offschedule_model="visit_schedule_app.OffScheduleThree",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule.add_schedule(self.schedule3)
site_visit_schedules.register(self.visit_schedule)
self.visit_schedule_two = VisitSchedule(
name="visit_schedule_two",
verbose_name="Visit Schedule Two",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule_two_1 = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.OnScheduleTwo",
offschedule_model="visit_schedule_app.OffScheduleTwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule_two_2 = Schedule(
name="schedule_four",
onschedule_model="visit_schedule_app.OnScheduleFour",
offschedule_model="visit_schedule_app.OffScheduleFour",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule_two.add_schedule(self.schedule_two_1)
self.visit_schedule_two.add_schedule(self.schedule_two_2)
site_visit_schedules.register(self.visit_schedule_two)
self.subject_identifier = "111111"
SubjectConsent.objects.create(
subject_identifier=self.subject_identifier)
class TestVisitSchedule3(SiteTestCaseMixin, TestCase):
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
import_holidays()
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
visit = Visit(
code="1000",
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
timepoint=1,
)
self.schedule.add_visit(visit)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_reference_configs.registry = {}
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
self.subject_identifier = self.subject_consent.subject_identifier
def test_put_on_schedule_creates_history(self):
self.schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow())
self.assertEqual(
SubjectScheduleHistory.objects.filter(
subject_identifier=self.subject_identifier).count(),
1,
)
def test_onschedule_creates_history(self):
onschedule_model_obj = OnSchedule.objects.create(
subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow())
self.assertEqual(
SubjectScheduleHistory.objects.filter(
subject_identifier=self.subject_identifier).count(),
1,
)
history_obj = SubjectScheduleHistory.objects.get(
subject_identifier=self.subject_identifier)
self.assertIsNone(history_obj.__dict__.get("offschedule_datetime"))
self.assertEqual(
history_obj.__dict__.get("onschedule_datetime"),
onschedule_model_obj.onschedule_datetime,
)
self.assertEqual(history_obj.__dict__.get("schedule_status"),
ON_SCHEDULE)
def test_can_create_offschedule_with_onschedule(self):
# signal puts on schedule
OnSchedule.objects.create(subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow())
try:
OffSchedule.objects.create(
subject_identifier=self.subject_identifier,
offschedule_datetime=get_utcnow(),
)
except Exception as e:
self.fail(f"Exception unexpectedly raised. Got {e}.")
def test_creates_appointments(self):
# signal puts on schedule
onschedule_datetime = get_utcnow() - relativedelta(years=4)
OnSchedule.objects.create(
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
self.assertGreater(Appointment.objects.all().count(), 0)
def test_creates_appointments_starting_with_onschedule_datetime(self):
"""Will pass as long as this is not a holiday"""
onschedule_datetime = datetime(2017,
7,
19,
15,
29,
44,
903192,
tzinfo=tzutc())
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
appointment = Appointment.objects.all().order_by(
"appt_datetime").first()
self.assertEqual(appointment.appt_datetime, onschedule_datetime)
def test_cannot_create_offschedule_without_onschedule(self):
self.assertEqual(
OnSchedule.objects.filter(
subject_identifier=self.subject_identifier).count(),
0,
)
self.assertRaises(
NotOnScheduleError,
OffSchedule.objects.create,
subject_identifier=self.subject_identifier,
)
def test_cannot_create_offschedule_before_onschedule(self):
onschedule_datetime = get_utcnow() - relativedelta(years=4)
OnSchedule.objects.create(
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
self.assertRaises(
InvalidOffscheduleDate,
OffSchedule.objects.create,
subject_identifier=self.subject_identifier,
offschedule_datetime=onschedule_datetime - relativedelta(months=2),
)
def test_cannot_create_offschedule_before_last_visit(self):
onschedule_datetime = get_utcnow() - relativedelta(years=4)
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
appointments = Appointment.objects.all()
SubjectVisit.objects.create(
appointment=appointments[0],
subject_identifier=self.subject_identifier,
report_datetime=appointments[0].appt_datetime,
reason=SCHEDULED,
)
self.assertRaises(
InvalidOffscheduleDate,
schedule.take_off_schedule,
subject_identifier=self.subject_identifier,
offschedule_datetime=appointments[0].appt_datetime -
relativedelta(days=1),
)
def test_cannot_put_on_schedule_if_visit_schedule_not_registered_subject(
self):
onschedule_datetime = get_utcnow() - relativedelta(years=4)
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
RegisteredSubject.objects.all().delete()
self.assertRaises(
UnknownSubjectError,
schedule.put_on_schedule,
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
def test_cannot_put_on_schedule_if_visit_schedule_not_consented(self):
onschedule_datetime = get_utcnow() - relativedelta(years=4)
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
SubjectConsent.objects.all().delete()
self.assertRaises(
NotConsentedError,
schedule.put_on_schedule,
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
def test_cannot_put_on_schedule_if_schedule_not_added(self):
self.assertRaises(SiteVisitScheduleError,
OnScheduleThree.objects.create)
class TestVisitSchedule2(SiteTestCaseMixin, TestCase):
def setUp(self):
import_holidays()
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule2 = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.onscheduletwo",
offschedule_model="visit_schedule_app.offscheduletwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.onschedulethree",
offschedule_model="visit_schedule_app.offschedulethree",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
def test_visit_schedule_add_schedule(self):
try:
self.visit_schedule.add_schedule(self.schedule)
except AlreadyRegisteredSchedule:
self.fail("AlreadyRegisteredSchedule unexpectedly raised.")
def test_visit_schedule_add_schedule_invalid_appointment_model(self):
self.assertRaises(
AttributeError,
Schedule,
name="schedule_bad",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model=None,
consent_model="visit_schedule_app.subjectconsent",
)
def test_visit_schedule_add_schedule_with_appointment_model(self):
self.visit_schedule.add_schedule(self.schedule3)
for schedule in self.visit_schedule.schedules.values():
self.assertEqual(schedule.appointment_model,
"edc_appointment.appointment")
def test_visit_already_added_to_schedule(self):
self.visit_schedule.add_schedule(self.schedule)
self.assertRaises(AlreadyRegisteredSchedule,
self.visit_schedule.add_schedule, self.schedule)
def test_visit_schedule_get_schedules(self):
self.visit_schedule.add_schedule(self.schedule)
self.assertIn(self.schedule, self.visit_schedule.schedules.values())
self.visit_schedule.add_schedule(self.schedule3)
self.assertIn(self.schedule3, self.visit_schedule.schedules.values())
def test_crfs_unique_show_order(self):
self.assertRaises(
FormsCollectionError,
FormsCollection,
Crf(show_order=10, model="edc_example.CrfOne"),
Crf(show_order=20, model="edc_example.CrfTwo"),
Crf(show_order=20, model="edc_example.CrfThree"),
)
try:
map_area = site_mappers.current_map_area
except AttributeError as e:
sys.stdout.write(
style.ERROR(
' * ERROR: visit schedule requires the current map area. '
'Either the site mapper is not set or the current map area '
'is not a valid \'community\'.\n Got {} ({})\n'.format(
site_mappers.current_map_area, str(e))))
visit_schedule_bhs = VisitSchedule(
name='visit_schedule_bhs',
verbose_name='BCPP Baseline Survey',
app_label=app_label,
enrollment_model=f'{app_label}.enrollmentbhs',
disenrollment_model=f'{app_label}.disenrollmentbhs',
visit_model=f'{app_label}.subjectvisit',
offstudy_model=f'{app_label}.subjectoffstudy',
previous_visit_schedule=None,
)
visit_schedule_bhs.add_schedule(bhs_schedule)
visit_schedule_ahs = VisitSchedule(
name='visit_schedule_ahs',
verbose_name='BCPP Annual Surveys',
app_label=app_label,
enrollment_model=f'{app_label}.enrollmentahs',
disenrollment_model=f'{app_label}.disenrollmentahs',
visit_model=f'{app_label}.subjectvisit',
offstudy_model=f'{app_label}.subjectoffstudy',
previous_visit_schedule=visit_schedule_bhs,
class TestVisitSchedule4(SiteTestCaseMixin, TestCase):
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
import_holidays()
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
visit = Visit(
code="1000",
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
timepoint=1,
)
self.schedule.add_visit(visit)
visit = Visit(
code="1010",
rbase=relativedelta(days=28),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
timepoint=2,
)
self.schedule.add_visit(visit)
self.visit_schedule.add_schedule(self.schedule)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_reference_configs.registry = {}
site_reference_configs.register_from_visit_schedule(visit_models={
"edc_appointment.appointment":
"visit_schedule_app.subjectvisit"
})
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
self.subject_identifier = self.subject_consent.subject_identifier
onschedule_datetime = get_utcnow() - relativedelta(years=4)
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=onschedule_datetime,
)
self.appointments = Appointment.objects.all()
def test_is_baseline(self):
subject_visit_0 = SubjectVisit.objects.create(
appointment=self.appointments[0],
subject_identifier=self.subject_identifier,
report_datetime=self.appointments[0].appt_datetime,
reason=SCHEDULED,
)
subject_visit_1 = SubjectVisit.objects.create(
appointment=self.appointments[1],
subject_identifier=self.subject_identifier,
report_datetime=self.appointments[1].appt_datetime,
reason=SCHEDULED,
)
self.assertTrue(is_baseline(subject_visit_0))
self.assertFalse(is_baseline(subject_visit_1))
class TestViewMixin(SiteTestCaseMixin, TestCase):
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.OnSchedule",
offschedule_model="visit_schedule_app.OffSchedule",
consent_model="visit_schedule_app.subjectconsent",
appointment_model="edc_appointment.appointment",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.OnScheduleThree",
offschedule_model="visit_schedule_app.OffScheduleThree",
consent_model="visit_schedule_app.subjectconsent",
appointment_model="edc_appointment.appointment",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule.add_schedule(self.schedule3)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
self.subject_identifier = "12345"
self.view = MyView()
self.view.kwargs = dict(subject_identifier=self.subject_identifier)
self.view.subject_identifier = self.subject_identifier
self.view.request = RequestFactory()
self.view.request.META = {"HTTP_CLIENT_IP": "1.1.1.1"}
self.view_current = MyViewCurrent()
self.view_current.kwargs = dict(
subject_identifier=self.subject_identifier)
self.view_current.subject_identifier = self.subject_identifier
self.view_current.request = RequestFactory()
self.view_current.request.META = {"HTTP_CLIENT_IP": "1.1.1.1"}
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
def test_context(self):
context = self.view.get_context_data()
self.assertIn("visit_schedules", context)
self.assertIn("onschedule_models", context)
def test_context_not_on_schedule(self):
context = self.view.get_context_data()
self.assertEqual(context.get("visit_schedules"), {})
self.assertEqual(context.get("onschedule_models"), [])
def test_context_on_schedule(self):
obj = OnSchedule.objects.create(
subject_identifier=self.subject_identifier)
context = self.view.get_context_data()
self.assertEqual(
context.get("visit_schedules"),
{self.visit_schedule.name: self.visit_schedule},
)
self.assertEqual(context.get("onschedule_models"), [obj])
def test_context_enrolled_current(self):
obj = OnSchedule.objects.create(
subject_identifier=self.subject_identifier)
context = self.view_current.get_context_data()
self.assertEqual(context.get("current_onschedule_model"), obj)
context.get("current_onschedule_model")
class TestSiteVisitSchedule1(TestCase):
def setUp(self):
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.onschedule",
offschedule_model="visit_schedule_app.offschedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule_two = VisitSchedule(
name="visit_schedule_two",
verbose_name="Visit Schedule Two",
offstudy_model="visit_schedule_app.subjectoffstudy",
death_report_model="visit_schedule_app.deathreport",
)
self.schedule_two = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.onscheduletwo",
offschedule_model="visit_schedule_app.offscheduletwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule_two.add_schedule(self.schedule_two)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
site_visit_schedules.register(self.visit_schedule_two)
def test_visit_schedules(self):
self.assertIn(self.visit_schedule,
site_visit_schedules.visit_schedules.values())
self.assertIn(self.visit_schedule_two,
site_visit_schedules.visit_schedules.values())
def test_get_visit_schedules(self):
"""Asserts returns a dictionary of visit schedules."""
self.assertEqual(len(site_visit_schedules.get_visit_schedules()), 2)
def test_get_visit_schedule_by_name(self):
visit_schedule_name = self.visit_schedule.name
self.assertEqual(
self.visit_schedule,
site_visit_schedules.get_visit_schedule(visit_schedule_name),
)
def test_get_visit_schedule_by_name_raises(self):
visit_schedule_name = "blahblah"
self.assertRaises(
SiteVisitScheduleError,
site_visit_schedules.get_visit_schedule,
visit_schedule_name,
)
def test_get_visit_schedule_by_name_raises2(self):
visit_schedule_name = "blah."
self.assertRaises(
SiteVisitScheduleError,
site_visit_schedules.get_visit_schedule,
visit_schedule_name,
)
def test_get_visit_schedule_by_name_raises3(self):
visit_schedule_name = ".blah"
self.assertRaises(
SiteVisitScheduleError,
site_visit_schedules.get_visit_schedule,
visit_schedule_name,
)
def test_get_schedule_by_onschedule_model(self):
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
self.assertEqual(schedule.onschedule_model_cls, OnSchedule)
def test_get_schedule_by_offschedule_model(self):
_, schedule = site_visit_schedules.get_by_offschedule_model(
"visit_schedule_app.offschedule")
self.assertEqual(schedule.offschedule_model_cls, OffSchedule)
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.OnSchedule",
offschedule_model="visit_schedule_app.OffSchedule",
consent_model="visit_schedule_app.subjectconsent",
appointment_model="edc_appointment.appointment",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.OnScheduleThree",
offschedule_model="visit_schedule_app.OffScheduleThree",
consent_model="visit_schedule_app.subjectconsent",
appointment_model="edc_appointment.appointment",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule.add_schedule(self.schedule3)
site_visit_schedules._registry = {}
site_visit_schedules.register(self.visit_schedule)
self.subject_identifier = "12345"
self.view = MyView()
self.view.kwargs = dict(subject_identifier=self.subject_identifier)
self.view.subject_identifier = self.subject_identifier
self.view.request = RequestFactory()
self.view.request.META = {"HTTP_CLIENT_IP": "1.1.1.1"}
self.view_current = MyViewCurrent()
self.view_current.kwargs = dict(
subject_identifier=self.subject_identifier)
self.view_current.subject_identifier = self.subject_identifier
self.view_current.request = RequestFactory()
self.view_current.request.META = {"HTTP_CLIENT_IP": "1.1.1.1"}
self.subject_consent = SubjectConsent.objects.create(
subject_identifier="12345",
consent_datetime=get_utcnow() - relativedelta(seconds=1),
dob=date(1995, 1, 1),
identity="11111",
confirm_identity="11111",
)
from edc_visit_schedule.visit import FormsCollection, Crf, Visit
from edc_visit_schedule.visit_schedule import VisitSchedule
from dateutil.relativedelta import relativedelta
crfs = FormsCollection(
Crf(show_order=1, model=f'edc_reference.crfone', required=True), )
visit0 = Visit(code='1000',
title='Day 1',
timepoint=0,
rbase=relativedelta(days=0),
rlower=relativedelta(days=0),
rupper=relativedelta(days=6),
crfs=crfs,
facility_name='default')
schedule = Schedule(name='schedule',
onschedule_model='edc_reference.onschedule',
offschedule_model='edc_reference.offschedule',
appointment_model='edc_appointment.appointment',
consent_model='edc_reference.subjectconsent')
schedule.add_visit(visit0)
visit_schedule = VisitSchedule(name='visit_schedule',
offstudy_model='edc_reference.subjectoffstudy',
death_report_model='edc_reference.deathreport')
visit_schedule.add_schedule(schedule)
class TestSubjectSchedule(SiteTestCaseMixin, TestCase):
def setUp(self):
v1_consent = Consent(
"visit_schedule_app.subjectconsent",
version="1",
start=Protocol().study_open_datetime,
end=Protocol().study_close_datetime,
age_min=18,
age_is_adult=18,
age_max=64,
gender=[MALE, FEMALE],
)
site_consents.registry = {}
site_consents.register(v1_consent)
site_visit_schedules._registry = {}
self.visit_schedule = VisitSchedule(
name="visit_schedule",
verbose_name="Visit Schedule",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule = Schedule(
name="schedule",
onschedule_model="visit_schedule_app.OnSchedule",
offschedule_model="visit_schedule_app.OffSchedule",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule3 = Schedule(
name="schedule_three",
onschedule_model="visit_schedule_app.OnScheduleThree",
offschedule_model="visit_schedule_app.OffScheduleThree",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule.add_schedule(self.schedule)
self.visit_schedule.add_schedule(self.schedule3)
site_visit_schedules.register(self.visit_schedule)
self.visit_schedule_two = VisitSchedule(
name="visit_schedule_two",
verbose_name="Visit Schedule Two",
offstudy_model="visit_schedule_app.SubjectOffstudy",
death_report_model="visit_schedule_app.DeathReport",
)
self.schedule_two_1 = Schedule(
name="schedule_two",
onschedule_model="visit_schedule_app.OnScheduleTwo",
offschedule_model="visit_schedule_app.OffScheduleTwo",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.schedule_two_2 = Schedule(
name="schedule_four",
onschedule_model="visit_schedule_app.OnScheduleFour",
offschedule_model="visit_schedule_app.OffScheduleFour",
appointment_model="edc_appointment.appointment",
consent_model="visit_schedule_app.subjectconsent",
)
self.visit_schedule_two.add_schedule(self.schedule_two_1)
self.visit_schedule_two.add_schedule(self.schedule_two_2)
site_visit_schedules.register(self.visit_schedule_two)
self.subject_identifier = "111111"
SubjectConsent.objects.create(
subject_identifier=self.subject_identifier)
def test_onschedule_updates_history(self):
"""Asserts returns the correct instances for the schedule."""
for onschedule_model, schedule_name in [
("visit_schedule_app.onscheduletwo", "schedule_two"),
("visit_schedule_app.onschedulefour", "schedule_four"),
]:
with self.subTest(onschedule_model=onschedule_model,
schedule_name=schedule_name):
visit_schedule, schedule = site_visit_schedules.get_by_onschedule_model(
onschedule_model)
subject_schedule = SubjectSchedule(
visit_schedule=visit_schedule, schedule=schedule)
subject_schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow(),
)
try:
SubjectScheduleHistory.objects.get(
subject_identifier=self.subject_identifier,
schedule_name=schedule_name,
)
except ObjectDoesNotExist:
self.fail("ObjectDoesNotExist unexpectedly raised")
def test_multpile_consents(self):
"""Asserts does not raise if more than one consent
for this subject
"""
subject_identifier = "ABCDEF"
SubjectConsent.objects.create(subject_identifier=subject_identifier,
version="1")
SubjectConsent.objects.create(subject_identifier=subject_identifier,
version="2")
visit_schedule, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onscheduletwo")
subject_schedule = SubjectSchedule(visit_schedule=visit_schedule,
schedule=schedule)
try:
subject_schedule.put_on_schedule(
subject_identifier=subject_identifier,
onschedule_datetime=get_utcnow())
except SubjectScheduleError:
self.fail("SubjectScheduleError unexpectedly raised.")
def test_resave(self):
"""Asserts returns the correct instances for the schedule."""
visit_schedule, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onscheduletwo")
subject_schedule = SubjectSchedule(visit_schedule=visit_schedule,
schedule=schedule)
subject_schedule.put_on_schedule(
subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow())
subject_schedule.resave(subject_identifier=self.subject_identifier)
def test_put_on_schedule(self):
_, schedule = site_visit_schedules.get_by_onschedule_model(
"visit_schedule_app.onschedule")
self.assertRaises(
ObjectDoesNotExist,
OnSchedule.objects.get,
subject_identifier=self.subject_identifier,
)
schedule.put_on_schedule(subject_identifier=self.subject_identifier,
onschedule_datetime=get_utcnow())
try:
OnSchedule.objects.get(subject_identifier=self.subject_identifier)
except ObjectDoesNotExist:
self.fail("ObjectDoesNotExist unexpectedly raised")
def test_take_off_schedule(self):
visit_schedule = site_visit_schedules.get_visit_schedule(
visit_schedule_name="visit_schedule")
schedule = visit_schedule.schedules.get("schedule")
schedule.put_on_schedule(subject_identifier=self.subject_identifier)
schedule.take_off_schedule(
subject_identifier=self.subject_identifier,
offschedule_datetime=get_utcnow(),
)
try:
OffSchedule.objects.get(subject_identifier=self.subject_identifier)
except ObjectDoesNotExist:
self.fail("ObjectDoesNotExist unexpectedly raised")