def test_spikecount_libv4peakindices():
"""basic: Test Spikecount in combination with LibV4 peak_indices"""
import efel
efel.reset()
stim_start = 500.0
stim_end = 900.0
time = efel.io.load_fragment('%s#col=1' % meanfrequency1_url)
voltage = efel.io.load_fragment('%s#col=2' % meanfrequency1_url)
trace = {}
trace['T'] = time
trace['V'] = voltage
trace['stim_start'] = [stim_start]
trace['stim_end'] = [stim_end]
features = ['peak_indices', 'Spikecount']
test_peak = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'DependencyV5_LibV4peakindices.txt')
efel.setDependencyFileLocation(test_peak)
feature_values = \
efel.getFeatureValues(
[trace],
features)
peak_indices = feature_values[0]['peak_indices']
spikecount = feature_values[0]['Spikecount'][0]
nt.assert_equal(len(peak_indices), 5)
nt.assert_equal(len(peak_indices), spikecount)
def test_spikecount_libv4peakindices():
"""basic: Test Spikecount in combination with LibV4 peak_indices"""
import efel
efel.reset()
stim_start = 500.0
stim_end = 900.0
time = efel.io.load_fragment('%s#col=1' % meanfrequency1_url)
voltage = efel.io.load_fragment('%s#col=2' % meanfrequency1_url)
trace = {}
trace['T'] = time
trace['V'] = voltage
trace['stim_start'] = [stim_start]
trace['stim_end'] = [stim_end]
features = ['peak_indices', 'Spikecount']
test_peak = os.path.join(os.path.dirname(os.path.abspath(__file__)),
'DependencyV5_LibV4peakindices.txt')
efel.setDependencyFileLocation(test_peak)
feature_values = \
efel.getFeatureValues(
[trace],
features)
peak_indices = feature_values[0]['peak_indices']
spikecount = feature_values[0]['Spikecount'][0]
nt.assert_equal(len(peak_indices), 5)
nt.assert_equal(len(peak_indices), spikecount)
def test_spikecount_libv4peakindices():
"""basic: Test Spikecount in combination with LibV4 peak_indices"""
import efel
efel.reset()
import numpy
stim_start = 500.0
stim_end = 900.0
data = numpy.loadtxt(joinp(testdata_dir, 'basic', 'mean_frequency_1.txt'))
time = data[:, 0]
voltage = data[:, 1]
trace = {}
trace['T'] = time
trace['V'] = voltage
trace['stim_start'] = [stim_start]
trace['stim_end'] = [stim_end]
features = ['peak_indices', 'Spikecount']
test_peak = joinp(os.path.dirname(os.path.abspath(__file__)),
'DependencyV5_LibV4peakindices.txt')
efel.setDependencyFileLocation(test_peak)
feature_values = \
efel.getFeatureValues(
[trace],
features)
peak_indices = feature_values[0]['peak_indices']
spikecount = feature_values[0]['Spikecount'][0]
nt.assert_equal(len(peak_indices), 5)
nt.assert_equal(len(peak_indices), spikecount)
