Exemplos de patch_quantities em Python

Exemplo n.º 1

Arquivo: current_source_density.py Projeto: TRuikes/elephant

"""

from __future__ import division, print_function, unicode_literals

import neo
import numpy as np
import quantities as pq
from scipy.integrate import simps

import elephant.current_source_density_src.utility_functions as utils
from elephant.current_source_density_src import KCSD, icsd
from elephant.utils import deprecated_alias

__all__ = ["estimate_csd", "generate_lfp"]

utils.patch_quantities()

available_1d = ['StandardCSD', 'DeltaiCSD', 'StepiCSD', 'SplineiCSD', 'KCSD1D']
available_2d = ['KCSD2D', 'MoIKCSD']
available_3d = ['KCSD3D']

kernel_methods = ['KCSD1D', 'KCSD2D', 'KCSD3D', 'MoIKCSD']
icsd_methods = ['DeltaiCSD', 'StepiCSD', 'SplineiCSD']

py_iCSD_toolbox = ['StandardCSD'] + icsd_methods


@deprecated_alias(coords='coordinates')
def estimate_csd(lfp,
                 coordinates='coordinates',
                 method=None,

Exemplo n.º 2

Arquivo: current_source_density.py Projeto: EmanueleLucrezia/elephant

CC and EH developed the interface to elephant.
"""

from __future__ import division

import neo
import quantities as pq
import numpy as np
from scipy import io
from scipy.integrate import simps

from elephant.current_source_density_src import KCSD
from elephant.current_source_density_src import icsd
import elephant.current_source_density_src.utility_functions as utils

utils.patch_quantities()

available_1d = ['StandardCSD', 'DeltaiCSD', 'StepiCSD', 'SplineiCSD', 'KCSD1D']
available_2d = ['KCSD2D', 'MoIKCSD']
available_3d = ['KCSD3D']

kernel_methods = ['KCSD1D', 'KCSD2D', 'KCSD3D', 'MoIKCSD']
icsd_methods = ['DeltaiCSD', 'StepiCSD', 'SplineiCSD']

py_iCSD_toolbox = ['StandardCSD'] + icsd_methods


def estimate_csd(lfp, coords=None, method=None,
                 process_estimate=True, **kwargs):
    """
    Fuction call to compute the current source density (CSD) from extracellular