def test_cost_case_insensitive(self):
"""Sending correct value but with wrong case as 'cost'
Purpose:
What happens when we send correct value but with incorrect case (free instead of Free)
Sent:
Value with correct string but lowercase (free instead of Free)
Expected outcome:
Resource registered with correct case
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_cost_case_insensitive'
sent_resource['cost'] = 'free'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_cost_case_insensitive',
format='json')
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_cost_case_insensitive'
expected_resource['cost'] = 'Free'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(response.status_code, status.HTTP_200_OK)
self.assertEqual(expected_resource, received_resource)
def test_inp_dataType_extra_fields(self):
"""Sending array of dicts with extra fields as 'dataType'
Purpose:
What happens when we send wrong type as the field (this case - add some fields to the object)
Sent:
Array of arrays of mixed types
Expected outcome:
Resource is registered, extra fields are ignored.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_inp_dataType_extra_fields'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'some': 'field'
}
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_inp_dataType_extra_fields',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_inp_dataType_extra_fields'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': [],
'dataHandle': None,
'dataDescription': None
}],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_contactEmail_correct(self):
"""Sending a correctly formatted string as 'contactEmail'
Purpose:
Basic test of successful sending of a string as contactEmail
Sent:
contactEmail as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_contactEmail_correct'
sent_resource['contact'] = [{'contactEmail': '*****@*****.**'}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_contactEmail_correct',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_contactEmail_correct'
expected_resource['contact'] = [{
'contactEmail': '*****@*****.**',
'contactURL': None,
'contactName': None,
'contactTel': None
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_homepage_non_ascii(self):
"""Sending string with non-ascii characters as 'homepage'
Purpose:
What happens when we send non-ascii characters
Sent:
String with non-ascii characters
Expected outcome:
Resource registered with non-ascii URL
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_homepage_non_ascii'
sent_resource['homepage'] = u'http://ąęćżźń£ØΔ♥†.com'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_homepage_non_ascii',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_homepage_non_ascii'
expected_resource['homepage'] = u'http://ąęćżźń£ØΔ♥†.com'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_collection_duplicate(self):
"""Sending two identical strings as 'collection'
Purpose:
Checking if the system will remove duplicate elements
Sent:
Two identical collection strings
Expected outcome:
Resource registered without the duplicate string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_collection_duplicate'
sent_resource['collection'] = [
'Just a collection', 'Just a collection'
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_collection_duplicate',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_collection_duplicate'
expected_resource['collection'] = ['Just a collection']
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_resource_creation_correct(self):
"""Sending one of allowed values as 'accessibility'
Purpose:
Basic test of successful sending of an allowed value for accessibility
Sent:
Allowed value for accessibility
Expected outcome:
Resource registered with the sent value
"""
sent_resource = emptyInputTool()
sent_resource['accessibility'] = ['Open access']
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/Resource_Name', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['biotoolsID'] = 'Resource_Name'
expected_resource['accessibility'] = ['Open access']
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_publicationsPrimaryID_correct_1(self):
"""Sending one of the allowed values as 'publicationsPrimaryID'
Purpose:
Basic test of successful sending of an allowed value for publicationsPrimaryID
Sent:
Allowed value for publicationsPrimaryID
Expected outcome:
Resource registered with the sent value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_publicationsPrimaryID_correct_1'
sent_resource['publications'] = {'publicationsPrimaryID': '21959131'}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get(
'/tool/test_publicationsPrimaryID_correct_1', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_publicationsPrimaryID_correct_1'
expected_resource['publications'] = {
'publicationsPrimaryID': '21959131',
'publicationsOtherID': []
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_homepage_300_length(self):
"""Sending 300 times character 'a' as 'homepage'
Purpose:
What happens when we send string of max allowed length
Sent:
300 times 'a'
Expected outcome:
Resource registered with 300 times 'a' as a homepage
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_homepage_300_length'
sent_resource['homepage'] = 'http://' + 293 * 'a'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_homepage_300_length',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_homepage_300_length'
expected_resource['homepage'] = 'http://' + 293 * 'a'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_homepage_correct(self):
"""Sending a correctly formatted string as 'homepage'
Purpose:
Basic test of successful sending of a string as homepage
Sent:
homepage as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_homepage_correct'
sent_resource['homepage'] = 'http://example.org'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_homepage_correct',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_homepage_correct'
expected_resource['homepage'] = 'http://example.org'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_mirror_correct_1(self):
"""Sending one URL as 'mirror'
Purpose:
Basic test of successful sending of an allowed value for mirror
Sent:
Allowed value for mirror
Expected outcome:
Resource registered with the sent value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_mirror_correct_1'
sent_resource['mirror'] = ['http://example.org']
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_mirror_correct_1', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_mirror_correct_1'
expected_resource['mirror'] = ['http://example.org']
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_elixirStatus_correct_1(self):
"""Sending one of the allowed values as 'elixirStatus'
Purpose:
Basic test of successful sending of an allowed value for elixirNode
Sent:
Allowed value for elixirNode
Expected outcome:
Resource registered with the sent value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_elixirStatus_correct_1'
sent_resource['elixirInfo'] = {
'elixirNode': 'Denmark',
'elixirStatus': 'ELIXIR Core Service'
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_elixirStatus_correct_1', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_elixirStatus_correct_1'
expected_resource['elixirInfo'] = {
'elixirNode': 'Denmark',
'elixirStatus': 'ELIXIR Core Service'
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_sourceRegistry_empty_zero_length(self):
"""Sending string of zero length as 'sourceRegistry'
Purpose:
What happens when we send empty string (zero length)
Sent:
''
Expected outcome:
Resource registered with zero-length string 'sourceRegistry'
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_sourceRegistry_zero_length'
sent_resource['sourceRegistry'] = ''
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_sourceRegistry_zero_length', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_sourceRegistry_zero_length'
expected_resource['sourceRegistry'] = ''
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_homepage_case_sensitive(self):
"""Sending camel case url as 'homepage'
Purpose:
What happens when we send URL with camel case
Sent:
Camel case URL
Expected outcome:
Resource registered with lowercase URL string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_homepage_case_sensitive'
sent_resource['homepage'] = 'HTTP://ExAmPlE.cOm'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_homepage_case_sensitive',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_homepage_case_sensitive'
expected_resource['homepage'] = 'HTTP://ExAmPlE.cOm'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_sourceRegistry_dict(self):
"""Sending dictionary as 'sourceRegistry'
Purpose:
What happens when we send wrong type as the field (this case - dict of mixed types)
Sent:
Dictionary with mixed types (strings and arrays)
Expected outcome:
Resource registered with stringified dictionary.
Note:
Spaces are added to the stringified value.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_sourceRegistry_dict'
sent_resource['sourceRegistry'] = {'a':'b','c':[1,2,3]}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_sourceRegistry_dict', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_sourceRegistry_dict'
expected_resource['sourceRegistry'] = "{u'a': u'b', u'c': [1, 2, 3]}"
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_sourceRegistry_number(self):
"""Sending number as 'sourceRegistry'
Purpose:
What happens when we send wrong type as the field (this case - number)
Sent:
Number
Expected outcome:
Resource registered with stringified number.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_sourceRegistry_number'
sent_resource['sourceRegistry'] = 1234567890
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_sourceRegistry_number', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_sourceRegistry_number'
expected_resource['sourceRegistry'] = '1234567890'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_Topic_Pass_URI_term(self):
"""Sending as 'topic': correct URI and term
Purpose:
Sending correct URI and term
Sent:
Correct URI and term
Expected outcome:
Resource registered - URI and term resolves to a concept
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_Topic_Pass_URI_term'
sent_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'term': 'Biology'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_Topic_Pass_URI_term',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_Topic_Pass_URI_term'
expected_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'term': 'Biology'
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_topic_extra_fields(self):
"""Sending array of dicts with extra fields as 'topic'
Purpose:
What happens when we send wrong type as the field (this case - add some fields to the object)
Sent:
Array of arrays of mixed types
Expected outcome:
Resource is registered, extra fields are ignored.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_topic_extra_fields'
sent_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'some': 'field'
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_topic_extra_fields',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_topic_extra_fields'
expected_resource['topic'] = [{
'uri': 'http://edamontology.org/topic_3070',
'term': 'Biology'
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_version_array(self):
"""Sending array as 'version'
Purpose:
What happens when we send wrong type as the field (this case - array of strings and arrays)
Sent:
Array with mixed types (strings and arrays)
Expected outcome:
Resource registered with stringified array.
Note:
Spaces are added to the stringified value.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_version_array'
sent_resource['version'] = ['a','b','c',['d']]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_version_array', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_version_array'
expected_resource['version'] = "[u'a', u'b', u'c', [u'd']]"
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_collection_correct_1(self):
"""Sending one string as 'collection'
Purpose:
Basic test of successful sending of a string as collection
Sent:
collection as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_collection_correct_1'
sent_resource['collection'] = ['Just a collection']
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_collection_correct_1',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_collection_correct_1'
expected_resource['collection'] = ['Just a collection']
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_elixirStatus_case_sensitive(self):
"""Sending correct value but with wrong case as 'elixirStatus'
Purpose:
What happens when we send correct value but with incorrect case (elixir core service instead of ELIXIR Core Service)
Sent:
Value with correct string but lowercase (elixir core service instead of ELIXIR Core Service)
Expected outcome:
Resource registered with correct case
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_elixirStatus_case_sensitive'
sent_resource['elixirInfo'] = {
'elixirNode': 'Denmark',
'elixirStatus': 'elixir core service'
}
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_elixirStatus_case_sensitive', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_elixirStatus_case_sensitive'
expected_resource['elixirInfo'] = {
'elixirNode': 'Denmark',
'elixirStatus': 'ELIXIR Core Service'
}
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_cost_correct_3(self):
"""Sending one of the allowed values as 'cost'
Purpose:
Basic test of successful sending of an allowed value for cost
Sent:
Allowed value for cost
Expected outcome:
Resource registered with the sent value
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_cost_correct_3'
sent_resource['cost'] = 'Commercial'
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_cost_correct_3', format='json')
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_cost_correct_3'
expected_resource['cost'] = 'Commercial'
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(response.status_code, status.HTTP_200_OK)
self.assertEqual(expected_resource, received_resource)
def test_input_dataType_Pass_URI_term(self):
"""Sending as 'dataType': correct URI and term
Purpose:
Sending correct URI and term
Sent:
Correct URI and term
Expected outcome:
Resource registered - URI and term resolves to a concept
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_input_dataType_Pass_URI_term'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
}
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_input_dataType_Pass_URI_term',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_input_dataType_Pass_URI_term'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [{
'dataType': {
'uri': 'http://edamontology.org/data_2044',
'term': 'Sequence'
},
'dataFormat': [],
'dataHandle': None,
'dataDescription': None
}],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionHandle_dict(self):
"""Sending dictionary as 'functionHandle'
Purpose:
What happens when we send wrong type as the field (this case - dict of mixed types)
Sent:
Dictionary with mixed types (strings and arrays)
Expected outcome:
Resource registered with stringified dictionary.
Note:
Spaces are added to the stringified value.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_dict'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': {'a':'b','c':[1,2,3]}
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionHandle_dict', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionHandle_dict'
expected_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': "{u'a': u'b', u'c': [1, 2, 3]}",
'functionDescription': None,
'input': [],
'output': []
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionHandle_correct(self):
"""Sending string as 'functionHandle'
Purpose:
Basic test of successful sending of a string as description
Sent:
description as a string
Expected outcome:
Resource registered with the sent string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_correct'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 'Just a functionHandle'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionHandle_correct', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionHandle_correct'
expected_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 'Just a functionHandle',
'functionDescription': None,
'input': [],
'output': []
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionHandle_300_length(self):
"""Sending 300 times character 'a' as 'functionHandle'
Purpose:
What happens when we send string of max allowed length
Sent:
300 times 'a'
Expected outcome:
Resource registered with 300 times 'a' as a description
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_300_length'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 300*'a'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionHandle_300_length', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionHandle_300_length'
expected_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 300*'a',
'functionDescription': None,
'input': [],
'output': []
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_operation_Pass_2_operations(self):
"""Sending as 'operation': 2 objects
Purpose:
Sending 2 operation objects to test if saving multiple operations works
Sent:
2 correct URI/term pairs
Expected outcome:
Resource registered with 2 operations
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_Pass_2_operations'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}, {
'uri': 'http://edamontology.org/operation_0227',
'term': 'Indexing'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_Pass_2_operations',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_Pass_2_operations'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}, {
'uri': 'http://edamontology.org/operation_0227',
'term': 'Indexing'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_functionHandle_non_ascii(self):
"""Sending string with non-ascii characters as 'functionHandle'
Purpose:
What happens when we send non-ascii characters
Sent:
String with non-ascii characters
Expected outcome:
Resource registered with the non-ascii characters
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_non_ascii'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': u'ąęćżźń£ Ø Δ ♥ †'
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionHandle_non_ascii', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionHandle_non_ascii'
expected_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': u'ąęćżźń£ Ø Δ ♥ †',
'functionDescription': None,
'input': [],
'output': []
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_functionHandle_number(self):
"""Sending number as 'functionHandle'
Purpose:
What happens when we send wrong type as the field (this case - number)
Sent:
Number
Expected outcome:
Resource registered with stringified number.
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_functionHandle_number'
sent_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': 1234567890
}
]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_functionHandle_number', format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_functionHandle_number'
expected_resource['function'] = [
{
'operation': [
{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}
],
'functionHandle': '1234567890',
'functionDescription': None,
'input': [],
'output': []
}
]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertEqual(expected_resource, received_resource)
def test_operation_duplicate(self):
"""Sending two identical strings as 'operation'
Purpose:
Checking if the system will remove duplicate elements
Sent:
Two identical operation strings
Expected outcome:
Resource registered without the duplicate string
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_duplicate'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004'
}, {
'uri': 'http://edamontology.org/operation_0004'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_duplicate',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_duplicate'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
def test_operation_Pass_URI_only(self):
"""Sending as 'operation': correct URI
Purpose:
Sending correct URI
Sent:
Correct URI
Expected outcome:
Resource registered - URI resolves to a concept, term filled in
"""
sent_resource = emptyInputTool()
sent_resource['id'] = 'test_operation_Pass_URI_only'
sent_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004'
}]
}]
response = self.client.post('/tool/', sent_resource, format='json')
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
response = self.client.get('/tool/test_operation_Pass_URI_only',
format='json')
self.assertEqual(response.status_code, status.HTTP_200_OK)
expected_resource = emptyOutputTool()
expected_resource['id'] = 'test_operation_Pass_URI_only'
expected_resource['function'] = [{
'operation': [{
'uri': 'http://edamontology.org/operation_0004',
'term': 'Operation'
}],
'functionDescription':
None,
'functionHandle':
None,
'input': [],
'output': []
}]
received_resource = json.loads(response.content)
received_resource['additionDate'] = None
received_resource['lastUpdate'] = None
self.assertItemsEqual(expected_resource, received_resource)
