def __get_display_preference_params(self):
HOMEDB.open_dict("display_preferences")
db = HOMEDB.display_preferences
p2d_auto_contrast = ParamDef(name="display_2d_auto_contrast",vartype="boolean",desc_short="2D image auto contrast",desc_long="Should the 2D image display module adjust contrast settings automatically?",property=None,defaultunits=db.get("display_2d_auto_contrast",dfl=True),choices=None)
p2d_stack_auto_contrast = ParamDef(name="display_stack_auto_contrast",vartype="boolean",desc_short="Stack (2D) - auto contrast",desc_long="Should the stack display module adjust contrast settings automatically?",property=None,defaultunits=db.get("display_stack_auto_contrast",dfl=True),choices=None)
p2d_stack_n = ParamDef(name="display_stack_np_for_auto",vartype="int",desc_short="Stack (2D) - # particles used for contrast settings",desc_long="When the stack viewer starts up it investigates the parameters of the first n particles to determine contrast settings. Specify -1 to force the stack viewer to investigate all particles.",property=None,defaultunits=db.get("display_stack_np_for_auto",dfl=5),choices=None)
params = []
params.append(p2d_auto_contrast)
params.append(p2d_stack_auto_contrast)
params.append(p2d_stack_n)
self.__display_entries = ["display_2d_auto_contrast","display_stack_auto_contrast","display_stack_np_for_auto"]
return params
def __get_tomoboxer_preference_params(self):
HOMEDB.open_dict("e2tomoboxer_preferences")
db = HOMEDB.e2tomoboxer_preferences
plargest_dim = ParamDef(name="largest_allowable_dimension",vartype="int",desc_short="Shrink to this",desc_long="The largest permissible image dimension of a tomogram after shrinking",property=None,defaultunits=db.get("largest_allowable_dimension",dfl=1024),choices=None)
params = []
params.append(plargest_dim)
self.__tomoboxer_entries = ["largest_allowable_dimension"]
return params
def get_history_table(self):
from eman2_gui.emdatastorage import ParamDef
try:
import EMAN2db
db = EMAN2db.EMAN2DB.open_db()
db.open_dict("history")
except:
db = None
params = []
try:
n = int(db.history["count"])
except:
n = 0
if db == None or n == 0:
params.append(
ParamDef(name="blurb",
vartype="text",
desc_short="",
desc_long="",
property=None,
defaultunits=
"There appears to be no history in this directory",
choices=None))
else:
from eman2_gui.emform import EMParamTable
start = []
duration = []
prgargs = []
cmd = []
full_cmd = []
params.append(
ParamDef(
name="blurb",
vartype="text",
desc_short="",
desc_long="",
property=None,
defaultunits=
"Use this form to examine the EMAN2 commands that have occurred in this directory.",
choices=None))
p = EMParamTable(name="commands",
desc_short="Historical table of EMAN2 commands",
desc_long="")
for i in range(n):
try:
h = db.history[i + 1]
except:
continue
if h != None and "path" in h and h["path"] == self.wd:
start.append(local_datetime(h["start"]))
if "end" in h:
duration.append(time_diff(h["end"] - h["start"]))
else:
if "progress" in h:
try:
duration.append(
str(int(h["progress"] * 100)) + "%")
except:
duration.append("incomplete")
else:
duration.append("incomplete")
args = h["args"]
if len(args) > 0:
cmd.append(base_name(args[0]))
full_cmd.append(args[0])
if len(args) > 1:
prgargs.append(" ".join(args[1:]))
else:
prgargs.append("")
else:
cmd.append("")
full_cmd.append("")
prgargs.append("")
pcmd = ParamDef(
name="cmd",
vartype="stringlist",
desc_short="Program",
desc_long=
"A shortened version of the name of a Python program that was executed",
property=None,
defaultunits=None,
choices=cmd)
pstart = ParamDef(
name="start",
vartype="stringlist",
desc_short="Start time",
desc_long="The time when the command was first executed",
property=None,
defaultunits=None,
choices=start)
pduration = ParamDef(
name="duration",
vartype="stringlist",
desc_short="Duration",
desc_long="The time taken to execute this command",
property=None,
defaultunits=None,
choices=duration)
pfull_cmd = ParamDef(name="fullcmd",
vartype="stringlist",
desc_short="File path",
desc_long="The location of program on disk",
property=None,
defaultunits=None,
choices=full_cmd)
pargs = ParamDef(
name="args",
vartype="stringlist",
desc_short="Arguments",
desc_long="The arguments that were given to the program",
property=None,
defaultunits=None,
choices=prgargs)
p.append(pcmd)
p.append(pstart)
p.append(pduration)
p.append(pargs)
p.append(pfull_cmd)
params.append(p)
return params