Exemplos de Phyloxml.export em Python

Exemplo n.º 1

Arquivo: phyloxml_from_scratch.py Projeto: razib764/Treelib

#          /-iajom
#     /---|
#    |     \-wiszh
#----|
#    |     /-xrygw
#     \---|
#         |     /-gjlwx
#          \---|
#               \-ijvnk

# Trees can be operated as normal ETE trees
phylo.show()

# Export the project as phyloXML format
project.export()

# <phy:Phyloxml xmlns:phy="http://www.phyloxml.org/1.10/phyloxml.xsd">
#     <phy:phylogeny>
#         <phy:name>test_tree</phy:name>
#         <phy:clade>
#             <phy:name>NoName</phy:name>
#             <phy:branch_length>0.000000e+00</phy:branch_length>
#             <phy:confidence type="branch_support">1.0</phy:confidence>
#             <phy:clade>
#                 <phy:name>NoName</phy:name>
#                 <phy:branch_length>1.665083e-01</phy:branch_length>
#                 <phy:confidence type="branch_support">0.938507980435</phy:confidence>
#                 <phy:clade>
#                     <phy:name>NoName</phy:name>
#                     <phy:branch_length>1.366655e-01</phy:branch_length>

Exemplo n.º 2

Arquivo: phyloxml_from_scratch.py Projeto: AlishaMechtley/ete

#          /-iajom
#     /---|
#    |     \-wiszh
#----|
#    |     /-xrygw
#     \---|
#         |     /-gjlwx
#          \---|
#               \-ijvnk

# Trees can be operated as normal ETE trees
phylo.show()


# Export the project as phyloXML format
project.export()

# <phy:Phyloxml xmlns:phy="http://www.phyloxml.org/1.10/phyloxml.xsd">
#     <phy:phylogeny>
#         <phy:name>test_tree</phy:name>
#         <phy:clade>
#             <phy:name>NoName</phy:name>
#             <phy:branch_length>0.000000e+00</phy:branch_length>
#             <phy:confidence type="branch_support">1.0</phy:confidence>
#             <phy:clade>
#                 <phy:name>NoName</phy:name>
#                 <phy:branch_length>1.665083e-01</phy:branch_length>
#                 <phy:confidence type="branch_support">0.938507980435</phy:confidence>
#                 <phy:clade>
#                     <phy:name>NoName</phy:name>
#                     <phy:branch_length>1.366655e-01</phy:branch_length>