def runAllExpTadpoleDrc(params,
expName,
dpmBuilder,
compareTrueParamsFunc=None):
""" runs all experiments"""
res = {}
params['patientID'] = AD
params['excludeID'] = -1
params['excludeXvalidID'] = -1
params['excludeStaging'] = [-1]
params['outFolder'] = 'resfiles/%s' % expName
params['expName'] = expName
dpmObjStd, res['std'] = evaluationFramework.runStdDPM(
params, expName, dpmBuilder, params['runPartMain'])
# dpmObjStd.plotter.plotAllBiomkDisSpace(dpmObjStd, params, disNr=0)
# perform the validation against DRC data
res['metrics'] = validateDRCBiomk(dpmObjStd, params)
return res
def runAllExpSynth(params, expName, dpmBuilder, compareTrueParamsFunc=None):
""" runs all experiments"""
res = {}
params['patientID'] = AD
params['excludeID'] = -1
params['excludeXvalidID'] = -1
params['excludeStaging'] = [-1]
params['outFolder'] = 'resfiles/synth/%s' % expName
dpmObjStd, res['std'] = evaluationFramework.runStdDPM(
params, expName, dpmBuilder, params['runPartMain'])
return res
def runAllExpTADPOLE(params, expName, dpmBuilder):
""" runs all experiments"""
res = {}
params['patientID'] = AD
params['excludeID'] = -1
params['excludeXvalidID'] = []
params['excludeStaging'] = [-1]
params['anchorID'] = MCI
# run if this is the master process or nrProcesses is 1
unluckyProc = (np.mod(params['currModel'] - 1, params['nrProcesses']) == params['runIndex'] - 1)
unluckyOrNoParallel = unluckyProc or (params['nrProcesses'] == 1) or params['masterProcess']
if unluckyOrNoParallel:
dpmObj, res['std'] = evaluationFramework.runStdDPM(params, expName, dpmBuilder, params['runPartMain'])
return res