u'latency_mean': 0.33,
u'latency_std': 0.18,
u'risetime_mean': 0.43,
u'risetime_std': 0.47,
u'space_clamp_correction_factor': 3.6,
u'synapse_type': u'Excitatory, depressing',
u'u_mean': 0.19,
u'u_std': 0.23
}
f.close()
j.clear()
# get out stats for synapses and connections, temporary
syn_param_stats = get_syn_params(PSET.populationParameters['m_type'],
PSET.populationParameters['me_type'],
pathways_physiology, mtype_map, synapses_tsv)
del synapses_tsv # not needed anymore.
###########################################################################
# Set up main connection parameters used by Network class instance methods
############################################################################
# Main connection parameters between pre and post-synaptic populations organized as
# dictionary of parameter lists between pre and postsynaptic populations:
if PSET.fully_connected:
connprob = [[1]*PSET.populationParameters.size]*PSET.populationParameters.size # fully connected network (no selfconnections)
else:
connprob = get_params(PSET.populationParameters['m_type'], pathways_anatomy,
u'gsyn_std': 0.11,
u'latency_mean': 0.33,
u'latency_std': 0.18,
u'risetime_mean': 0.43,
u'risetime_std': 0.47,
u'space_clamp_correction_factor': 3.6,
u'synapse_type': u'Excitatory, depressing',
u'u_mean': 0.19,
u'u_std': 0.23
}
f.close()
j.clear()
# get out stats for synapses and connections, temporary
syn_param_stats = get_syn_params(PSET.populationParameters['m_type'],
PSET.populationParameters['me_type'],
pathways_physiology, mtype_map, synapses_tsv)
del synapses_tsv # not needed anymore.
###########################################################################
# Set up main connection parameters used by Network class instance methods
############################################################################
# Main connection parameters between pre and post-synaptic populations organized as
# dictionary of parameter lists between pre and postsynaptic populations:
if PSET.fully_connected:
connprob = [
[1] * PSET.populationParameters.size
] * PSET.populationParameters.size # fully connected network (no selfconnections)
else: