from holoviews import NdMapping, Layout from holoviews.interface.collector import Collector from holoviews.core.element import Collator from lancet import PrettyPrinted, vcs_metadata from lancet import Command from lancet import Launcher, review_and_launch from lancet import ViewFile from lancet import Log, FileInfo, FileType from lancet import List, Args import topo try: from external import sys_paths submodule_paths = sys_paths() ordering = ['topographica', 'param', 'paramtk', 'imagen', 'lancet'] summarized = ['topographica', 'param', 'imagen', 'lancet'] submodules = [[p for p in submodule_paths if p.endswith(name)][0] for name in ordering] except: submodules = [] from topo.misc.commandline import default_output_path review_and_launch.output_directory = default_output_path() Launcher.output_directory = default_output_path() class topo_metadata(param.Parameterized): """ Topographica specific helper function that expands on Lancet's vcs_metadata function to generate suitable metadata information for
from holoviews import NdMapping, Layout
from holoviews.interface.collector import Collector
from holoviews.core.element import Collator
from holoviews.core.io import Pickler
from lancet import PrettyPrinted, vcs_metadata
from lancet import Command
from lancet import Launcher, review_and_launch
from lancet import Log, FileInfo, FileType
from lancet import List, Args
import topo
try:
from external import sys_paths
submodule_paths = sys_paths()
ordering = ['topographica', 'param', 'paramtk', 'imagen', 'lancet']
summarized = ['topographica', 'param', 'imagen', 'lancet']
submodules = [[p for p in submodule_paths if p.endswith(name)][0]
for name in ordering]
except:
submodules = []
from topo.misc.commandline import default_output_path
review_and_launch.output_directory = default_output_path()
Launcher.output_directory = default_output_path()
class topo_metadata(param.Parameterized):
"""
Topographica specific helper function that expands on Lancet's
def t_action(option,opt_str,value,parser):
"""Callback function for the -t option for invoking tests."""
local_target_descriptions = {"unit":"Quick unit tests using nosetests and doctest.",
"all":"All correctness tests (i.e. all tests but speed, coverage).",
"coverage":"Same as unit but measuring test coverage.",
"exhaustive":"Slow system tests.",
"speed":"Test for changes in execution speed.",
"quick":"All tests whose runtimes are in seconds.",
"flakes":"Run pyflakes static code checker."}
local_targets = []
env = os.environ.copy()
pypath = env.get('PYTHONPATH','')
env['PYTHONPATH'] = pypath + ':'.join(p for p in sys_paths())
# Targets handled in this file
if value in ["list","unit","flakes","coverage"]:
local_targets += [value]
value = None
# Other targets require runtests.py
if value == "quick":
local_targets += ["unit","flakes"]
if value == "all":
local_targets += ["unit","flakes"]
value = "exhaustive"
import subprocess
global return_code
# JABALERT: Unlike the tests in runtests.py, will not use xvfb-run
# to hide GUI windows being tested. Once runtests.py is made into
# a module, the code it contains for conditionally using xvfb-run
# can be applied here as well.
if "flakes" in local_targets:
targets = ["topo", "external/param", "external/paramtk", "external/imagen", "external/lancet"]
ret = subprocess.call(["python","topo/tests/buildbot/pyflakes-ignore.py","--ignore", "topo/tests","--total"] + targets)
return_code += abs(ret)
if "unit" in local_targets:
proc = subprocess.Popen(["nosetests", "-v", "--with-doctest",
"--doctest-extension=txt"], env=env)
proc.wait()
return_code += abs(proc.returncode)
if "coverage" in local_targets:
proc = subprocess.Popen(["nosetests", "-v", "--with-doctest",
"--doctest-extension=txt",
"--with-cov", "--cov-report", "html"], env=env)
proc.wait()
return_code += abs(proc.returncode)
from topo.tests.runtests import target_description
if value is not None:
if value not in ["quick","exhaustive"] and value not in target_description:
print "\nCould not find test target %r.\n" % value
local_targets =['list']
else:
global_params.exec_in_context("targets=['%s']" % value)
# Call runtests.run_tests() as if it were a proper module
ns={}
execfile('./topo/tests/runtests.py',ns,ns)
return_code += len(ns["run_tests"]())
if "list" in local_targets:
available_items = sorted((target_description.items() + local_target_descriptions.items()))
max_len = max(len(k) for k,_ in available_items)
print ("---------------\nAvailable tests\n---------------\n%s"
% "\n".join('%s%s : %s'% (k,' '*(max_len-len(k)),v)
for k,v in available_items))
global something_executed
something_executed=True
def t_action(option, opt_str, value, parser):
"""Callback function for the -t option for invoking tests."""
local_target_descriptions = {
"unit": "Quick unit tests using nosetests and doctest.",
"all": "All correctness tests (i.e. all tests but speed, coverage).",
"coverage": "Same as unit but measuring test coverage.",
"exhaustive": "Slow system tests.",
"speed": "Test for changes in execution speed.",
"quick": "All tests whose runtimes are in seconds.",
"flakes": "Run pyflakes static code checker."
}
local_targets = []
env = os.environ.copy()
pypath = env.get('PYTHONPATH', '')
env['PYTHONPATH'] = pypath + ':'.join(p for p in sys_paths())
# Targets handled in this file
if value in ["list", "unit", "flakes", "coverage"]:
local_targets += [value]
value = None
# Other targets require runtests.py
if value == "quick":
local_targets += ["unit", "flakes"]
if value == "all":
local_targets += ["unit", "flakes"]
value = "exhaustive"
import subprocess
global return_code
# JABALERT: Unlike the tests in runtests.py, will not use xvfb-run
# to hide GUI windows being tested. Once runtests.py is made into
# a module, the code it contains for conditionally using xvfb-run
# can be applied here as well.
if "flakes" in local_targets:
targets = [
"topo", "external/param", "external/paramtk", "external/holoviews",
"external/imagen", "external/lancet"
]
ret = subprocess.call([
"python", "topo/tests/buildbot/pyflakes-ignore.py", "--ignore",
"topo/tests", "--total"
] + targets)
return_code += abs(ret)
if "unit" in local_targets:
proc = subprocess.Popen(
["nosetests", "-v", "--with-doctest", "--doctest-extension=txt"],
env=env)
proc.wait()
return_code += abs(proc.returncode)
if "coverage" in local_targets:
proc = subprocess.Popen([
"nosetests", "-v", "--with-doctest", "--doctest-extension=txt",
"--with-cov", "--cov-report", "html"
],
env=env)
proc.wait()
return_code += abs(proc.returncode)
from topo.tests.runtests import target_description
if value is not None:
if value not in ["quick", "exhaustive"
] and value not in target_description:
print "\nCould not find test target %r.\n" % value
local_targets = ['list']
else:
global_params.exec_in_context("targets=['%s']" % value)
# Call runtests.run_tests() as if it were a proper module
ns = {}
execfile('./topo/tests/runtests.py', ns, ns)
return_code += len(ns["run_tests"]())
if "list" in local_targets:
available_items = sorted(
(target_description.items() + local_target_descriptions.items()))
max_len = max(len(k) for k, _ in available_items)
print(
"---------------\nAvailable tests\n---------------\n%s" %
"\n".join('%s%s : %s' % (k, ' ' * (max_len - len(k)), v)
for k, v in available_items))
global something_executed
something_executed = True
import os, sys, types, pickle, inspect from collections import namedtuple import numpy.version as np_version import topo import param from lancet import PrettyPrinted, vcs_metadata from lancet import Command from lancet import Launcher, review_and_launch from lancet import NumpyFile try: from external import sys_paths submodules = sys_paths() except: submodules = [] from topo.misc.commandline import default_output_path review_and_launch.output_directory = default_output_path() Launcher.output_directory = default_output_path() class topo_metadata(param.Parameterized): """ Topographica specific helper function that expands on Lancet's vcs_metadata function to generate suitable metadata information for logging with Lancet. Records Topographica version control information as well as information about all relevant submodules and the current numpy version.
