Exemplos de xform_script_for_preads em Python

Exemplo n.º 1

Arquivo: test_functional.py Projeto: minqing1/FALCON

def test_xform_script_for_preads():
    # Technically, we never have more than one daligner in a script, but that
    # could change in pbsmrtpipe, since it limits the number of chunks.
    script = 'daligner x y\nLAsort a b\ndaligner x1 y1\n'
    expected = 'daligner_p x y\nLAsort a b\ndaligner_p x1 y1\n'
    result = f.xform_script_for_preads(script)
    eq_(result, expected)

    script = 'daligner x y\nLAsort a b\ndaligner x1 y1\n'
    expected = script # no-op
    result = f.xform_script_for_raw_reads(script)
    eq_(result, expected)

    eq_(f.get_script_xformer(True), f.xform_script_for_preads)
    eq_(f.get_script_xformer(False), f.xform_script_for_raw_reads)

Exemplo n.º 2

def test_xform_script_for_preads():
    # Technically, we never have more than one daligner in a script, but that
    # could change in pbsmrtpipe, since it limits the number of chunks.
    script = 'daligner x y\nLAsort a b\ndaligner x1 y1\n'
    expected = 'daligner_p x y\nLAsort a b\ndaligner_p x1 y1\n'
    result = f.xform_script_for_preads(script)
    eq_(result, expected)

    script = 'daligner x y\nLAsort a b\ndaligner x1 y1\n'
    expected = script  # no-op
    result = f.xform_script_for_raw_reads(script)
    eq_(result, expected)

    eq_(f.get_script_xformer(True), f.xform_script_for_preads)
    eq_(f.get_script_xformer(False), f.xform_script_for_raw_reads)