def parse_discordant_by_qname(infh):
frags = []
for line in infh:
fields = line.strip().split('\t')
frag = DiscordantFragment.from_list(fields)
qname = frag.qname
if len(frags) > 0 and (qname != frags[-1].qname):
yield frags
frags = []
frags.append(frag)
if len(frags) > 0:
yield frags
def parse_discordant_by_qname(infh):
frags = []
for line in infh:
fields = line.strip().split('\t')
frag = DiscordantFragment.from_list(fields)
qname = frag.qname
if len(frags) > 0 and (qname != frags[-1].qname):
yield frags
frags = []
frags.append(frag)
if len(frags) > 0:
yield frags
def parse_discordant_reads(infh):
for line in infh:
fields = line.strip().split('\t')
frag = DiscordantFragment.from_list(fields)
yield frag