def test_fully_custom_transform():
sample1 = Sample(fcs_path_or_data=data1_fcs_path)
sample2 = Sample(fcs_path_or_data=data1_fcs_path)
custom_xforms = {
'FL1-H': xform_biex1,
'FL2-H': xform_biex1,
'FL3-H': xform_biex2,
'FL2-A': xform_biex1,
'FL4-H': xform_biex1
}
sample1.apply_transform(xform_biex1)
sample2.apply_transform(custom_xforms)
fl2_idx = sample1.get_channel_index('FL2-H')
fl3_idx = sample1.get_channel_index('FL3-H')
s1_fl2 = sample1.get_channel_events(fl2_idx, source='xform')
s2_fl2 = sample2.get_channel_events(fl2_idx, source='xform')
s1_fl3 = sample1.get_channel_events(fl3_idx, source='xform')
s2_fl3 = sample2.get_channel_events(fl3_idx, source='xform')
np.testing.assert_equal(s1_fl2, s2_fl2)
np.testing.assert_raises(AssertionError, np.testing.assert_equal,
s1_fl3, s2_fl3)
def test_get_channel_data_xform():
fcs_file_path = "examples/test_comp_example.fcs"
comp_file_path = Path("examples/comp_complete_example.csv")
sample = Sample(fcs_path_or_data=fcs_file_path,
compensation=comp_file_path)
sample.apply_transform(xform_logicle)
data_idx_6 = sample.get_channel_data(6, source='xform')
np.testing.assert_equal(sample._transformed_events[:, 6], data_idx_6)
