def _checkCallSetIds(self, variantFile):
"""
Checks callSetIds for consistency
"""
if len(self._callSetIdMap) > 0:
callSetIds = set([
self.getCallSetId(sample)
for sample in variantFile.header.samples])
if callSetIds != set(self._callSetIdMap.keys()):
raise exceptions.InconsistentCallSetIdException(
variantFile.filename)
def _updateCallSetIds(self, variantFile):
"""
Updates the call set IDs based on the specified variant file.
"""
# If this is the first file, we add in the samples. If not, we check
# for consistency.
if len(self._callSetIdMap) == 0:
for sample in variantFile.header.samples:
self.addCallSet(sample)
else:
callSetIds = set([
self.getCallSetId(sample)
for sample in variantFile.header.samples])
if callSetIds != set(self._callSetIdMap.keys()):
raise exceptions.InconsistentCallSetIdException(
variantFile.filename)