def test_arg_parse():
parser = arg_parser()
# defaults
args = parser.parse_args([])
assert not args.with_reference_data
assert not args.history_per_test_case
assert args.page_size == 0
assert args.page_number == 0
assert args.parallel_tests == 1
# skip flags
args = parser.parse_args(
["--skip-with-reference-data", "--history-per-test-case"])
assert not args.with_reference_data
assert args.history_per_test_case
# enable flags
args = parser.parse_args(["--with-reference-data", "--history-per-suite"])
assert args.with_reference_data
assert not args.history_per_test_case
# pagination
args = parser.parse_args(
["--page-size", "5", "--page-number", "40", "--parallel-tests", "3"])
assert args.page_size == 5
assert args.page_number == 40
assert args.parallel_tests == 3
assert args.test_data is None
args = parser.parse_args(["--test-data", "/foo/bar", "--test-data", "cow"])
assert len(args.test_data) == 2
assert args.test_data[0] == "/foo/bar"
assert args.test_data[1] == "cow"
args = parser.parse_args(["--skip-previously-successful"])
assert args.skip == "successful"
args = parser.parse_args(["--skip-previously-executed"])
assert args.skip == "executed"
def main(argv=None):
"""Entry point function for galaxy-workflow-tool-tests."""
if argv is None:
argv = sys.argv[1:]
parser = arg_parser()
parser.add_argument('workflow_id',
metavar='WORKFLOW_ID',
help='workflow id to scan for tools')
args = parser.parse_args(argv)
gi = galaxy.GalaxyInstance(url=args.galaxy_url,
key=args.admin_key or args.key)
workflows = gi.workflows
workflow_dict = workflows.export_workflow_dict(args.workflow_id)
tool_ids = []
for step_dict in workflow_dict.get("steps").values():
if not step_dict.get("type") == "tool":
continue
tool_ids.append(step_dict["tool_id"])
def tool_not_in_workflow(test_reference):
return test_reference.tool_id not in tool_ids
run_tests(args, test_filters=[tool_not_in_workflow])