def test_tool_requirements():
tool_requirements_ab = ToolRequirements([REQUIREMENT_A, REQUIREMENT_B])
tool_requirements_ab_dup = ToolRequirements([REQUIREMENT_A, REQUIREMENT_B])
tool_requirements_b = ToolRequirements([REQUIREMENT_A])
assert tool_requirements_ab == ToolRequirements([REQUIREMENT_B, REQUIREMENT_A])
assert tool_requirements_ab == ToolRequirements([REQUIREMENT_B, REQUIREMENT_A, REQUIREMENT_A])
assert tool_requirements_ab != tool_requirements_b
assert len(set([tool_requirements_ab, tool_requirements_ab_dup])) == 1
def test_shell_commands_built():
# Test that dependency manager builds valid shell commands for a list of
# requirements.
with __test_base_path() as base_path:
dm = __dependency_manager_for_base_path(default_base_path=base_path)
__setup_galaxy_package_dep(base_path, TEST_REPO_NAME, TEST_VERSION, contents="export FOO=\"bar\"")
mock_requirements = ToolRequirements([{'type': 'package', 'version': TEST_VERSION, 'name': TEST_REPO_NAME}])
commands = dm.dependency_shell_commands(mock_requirements)
__assert_foo_exported(commands)
def from_dict(as_dict):
if as_dict is None:
return None
requirements_dicts = as_dict.get('requirements', [])
requirements = ToolRequirements.from_list(requirements_dicts)
installed_tool_dependencies_dicts = as_dict.get('installed_tool_dependencies', [])
installed_tool_dependencies = map(DependenciesDescription._toolshed_install_dependency_from_dict, installed_tool_dependencies_dicts)
return DependenciesDescription(
requirements=requirements,
installed_tool_dependencies=installed_tool_dependencies
)
def from_dict(as_dict):
if as_dict is None:
return None
requirements_dicts = as_dict.get('requirements', [])
requirements = ToolRequirements.from_list(requirements_dicts)
installed_tool_dependencies_dicts = as_dict.get(
'installed_tool_dependencies', [])
installed_tool_dependencies = map(
DependenciesDescription._toolshed_install_dependency_from_dict,
installed_tool_dependencies_dicts)
return DependenciesDescription(
requirements=requirements,
installed_tool_dependencies=installed_tool_dependencies)
def get_dependencies(builder): # type: (HasReqsHints) -> ToolRequirements
(software_requirement, _) = builder.get_requirement("SoftwareRequirement")
dependencies = [] # type: List[ToolRequirement]
if software_requirement and software_requirement.get("packages"):
packages = software_requirement.get("packages")
for package in packages:
version = package.get("version", None)
if isinstance(version, MutableSequence):
if version:
version = version[0]
else:
version = None
specs = [{"uri": s} for s in package.get("specs", [])]
dependencies.append(ToolRequirement.from_dict(dict(
name=package["package"].split("#")[-1],
version=version,
type="package",
specs=specs,
)))
return ToolRequirements.from_list(dependencies)
def get_dependencies(builder): # type: (HasReqsHints) -> ToolRequirements
(software_requirement, _) = builder.get_requirement("SoftwareRequirement")
dependencies = [] # type: List[ToolRequirement]
if software_requirement and software_requirement.get("packages"):
packages = software_requirement.get("packages")
for package in packages:
version = package.get("version", None)
if isinstance(version, MutableSequence):
if version:
version = version[0]
else:
version = None
specs = [{"uri": s} for s in package.get("specs", [])]
dependencies.append(ToolRequirement.from_dict(dict(
name=package["package"].split("#")[-1],
version=version,
type="package",
specs=specs,
)))
return ToolRequirements.from_list(dependencies)