def get_complete_workflows(self):
workflows = []
for workflow_entry in self.get_workflows():
workflow = GalaxyWorkflow(workflow_entry['name'], workflow_entry['id'])
# get workflow inputs
for i in range(len(self.get_workflow(workflow.identifier)['inputs'])):
input_identifier = \
self.get_workflow(workflow.identifier)['inputs'].keys()[i]
workflow_input = GalaxyWorkflowInput(
self.get_workflow(workflow.identifier)['inputs'][input_identifier]['label'],
input_identifier)
workflow.add_input(workflow_input)
workflows.append(workflow)
return workflows
def get_complete_workflows(self):
connection = self.galaxy_connection()
workflows = []
for workflow_entry in connection.workflows.get_workflows():
workflow = GalaxyWorkflow(workflow_entry['name'],
workflow_entry['id'])
# get workflow inputs
workflow_inputs = connection.workflows.show_workflow(
workflow.identifier)['inputs']
for input_identifier, input_description in workflow_inputs.items():
workflow_input = GalaxyWorkflowInput(
input_description['label'], input_identifier)
workflow.add_input(workflow_input)
workflows.append(workflow)
return workflows
def get_complete_workflows(self):
workflows = []
for workflow_entry in self.get_workflows():
workflow = GalaxyWorkflow(workflow_entry['name'],
workflow_entry['id'])
# get workflow inputs
for i in range(
len(self.get_workflow(workflow.identifier)['inputs'])):
input_identifier = \
self.get_workflow(workflow.identifier)['inputs'].keys()[i]
workflow_input = GalaxyWorkflowInput(
self.get_workflow(workflow.identifier)['inputs']
[input_identifier]['label'], input_identifier)
workflow.add_input(workflow_input)
workflows.append(workflow)
return workflows
