def test_abort_error_hs_number(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_all_mirna(hs_number=["hs-foobar"]), 404)
def test_abort_error_limit(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_all_mirna(disease_name="foobar",
limit=20000), 404)
def test_abort_error_no_data(self):
app.config["TESTING"] = True
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_all_mirna(
disease_name="bladder urothelial carcinoma",
mimat_number=['MIMAT0004482']), 404)
def test_abort_error_mimat_and_hs_number(self):
app.config["TESTING"] = True
self.app = app.test_client()
self.app = app.test_client()
with self.assertRaises(HTTPException) as http_error:
# retrieve current API response to request
self.assertEqual(
geneInteraction.read_all_mirna(
disease_name="head and neck squamous cell carcinoma",
mimat_number=['MIMAT0000062'],
hs_number=['hsa-let-7a-5p']), 404)
def test_miRNA_Interaction_getOccurences_disease_and_hs_number(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_all_mirna(
disease_name='bladder urothelial carcinoma',
hs_number=['hsa-miR-24-3p', 'hsa-miR-96-5p'],
occurences=500,
limit=50)
# retrieve current API response to request
api_response = geneInteraction.read_all_mirna(
disease_name='bladder urothelial carcinoma',
hs_number=['hsa-miR-24-3p', 'hsa-miR-96-5p'],
occurences=500,
limit=50)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_miRNA_Interaction_getOccurences_disease_and_hs_number(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_all_mirna(
disease_name='head and neck squamous cell carcinoma',
hs_number=['hsa-let-7c-3p', 'hsa-let-7f-1-3p'],
occurences=10,
limit=50)
# retrieve current API response to request
api_response = geneInteraction.read_all_mirna(
disease_name='head and neck squamous cell carcinoma',
hs_number=['hsa-let-7c-3p', 'hsa-let-7f-1-3p'],
occurences=10,
limit=50)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_miRNA_Interaction_getOccurences_disease_and_mimat_number(self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_all_mirna(
disease_name='head and neck squamous cell carcinoma',
mimat_number=['MIMAT0026472', 'MIMAT0004486'],
occurences=10,
sorting="occurences",
limit=50)
# retrieve current API response to request
api_response = geneInteraction.read_all_mirna(
disease_name='head and neck squamous cell carcinoma',
mimat_number=['MIMAT0026472', 'MIMAT0004486'],
occurences=10,
sorting="occurences",
limit=50)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
def test_miRNA_Interaction_getOccurences_disease_and_mimat_number_sorting_desc(
self):
app.config["TESTING"] = True
self.app = app.test_client()
# retrieve correct database response to request
mock_response = test_read_all_mirna(
disease_name='bladder urothelial carcinoma',
mimat_number=['MIMAT0000080', 'MIMAT0000095'],
occurences=500,
limit=50,
sorting="occurences",
descending=True)
# retrieve current API response to request
api_response = geneInteraction.read_all_mirna(
disease_name='bladder urothelial carcinoma',
mimat_number=['MIMAT0000080', 'MIMAT0000095'],
occurences=500,
sorting="occurences",
limit=50,
descending=True)
# assert that the two output the same
self.assertEqual(mock_response, api_response)
