def post(self, project):
user = self.get_secure_cookie('user')
email = self.get_secure_cookie('email')
a_type = self.get_argument('type', '')
title = self.get_argument('title', '')
url = self.get_argument('url', '')
desc = self.get_argument('desc','')
if not a_type or not title:
self.set_status(400)
self.finish('<html><body>Link title and type is required</body></html>')
else:
p = Project(lims, id=project)
p.get(force=True)
links = json.loads(p.udf['Links']) if 'Links' in p.udf else {}
links[str(datetime.datetime.now())] = {'user': user,
'email': email,
'type': a_type,
'title': title,
'url': url,
'desc': desc}
p.udf['Links'] = json.dumps(links)
p.put()
self.set_status(200)
#ajax cries if it does not get anything back
self.set_header("Content-type", "application/json")
self.finish(json.dumps(links))
def post(self, project):
note = self.get_argument('note', '')
category = self.get_argument('category', '')
user = self.get_secure_cookie('user')
email = self.get_secure_cookie('email')
timestamp = datetime.datetime.strftime(datetime.datetime.now(), '%Y-%m-%d %H:%M:%S')
if not note:
self.set_status(400)
self.finish('<html><body>No project id or note parameters found</body></html>')
else:
newNote = {'user': user, 'email': email, 'note': note, 'category' : category, 'timestamp': timestamp}
p = Project(lims, id=project)
p.get(force=True)
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
running_notes[timestamp] = newNote
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
#saving running notes directly in genstat, because reasons.
v=self.application.projects_db.view("project/project_id")
for row in v[project]:
doc_id=row.value
doc=self.application.projects_db.get(doc_id)
doc['details']['running_notes']=json.dumps(running_notes)
self.application.projects_db.save(doc)
self.set_status(201)
self.write(json.dumps(newNote))
def post(self, project):
user = self.get_current_user()
a_type = self.get_argument('type', '')
title = self.get_argument('title', '')
url = self.get_argument('url', '')
desc = self.get_argument('desc', '')
if not a_type or not title:
self.set_status(400)
self.finish(
'<html><body>Link title and type is required</body></html>')
else:
p = Project(lims, id=project)
p.get(force=True)
links = json.loads(p.udf['Links']) if 'Links' in p.udf else {}
links[str(datetime.datetime.now())] = {
'user': user.name,
'email': user.email,
'type': a_type,
'title': title,
'url': url,
'desc': desc
}
p.udf['Links'] = json.dumps(links)
p.put()
self.set_status(200)
#ajax cries if it does not get anything back
self.set_header("Content-type", "application/json")
self.finish(json.dumps(links))
def post(self, project):
note = self.get_argument('note', '')
category = self.get_argument('category', '')
user = self.get_secure_cookie('user')
email = self.get_secure_cookie('email')
timestamp = datetime.datetime.strftime(datetime.datetime.now(), '%Y-%m-%d %H:%M:%S')
if not note:
self.set_status(400)
self.finish('<html><body>No project id or note parameters found</body></html>')
else:
newNote = {'user': user, 'email': email, 'note': note, 'category' : category, 'timestamp': timestamp}
p = Project(lims, id=project)
p.get(force=True)
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
running_notes[timestamp] = newNote
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
#saving running notes directly in genstat, because reasons.
v=self.application.projects_db.view("project/project_id")
for row in v[project]:
doc_id=row.value
doc=self.application.projects_db.get(doc_id)
doc['details']['running_notes']=json.dumps(running_notes)
self.application.projects_db.save(doc)
self.set_status(201)
self.write(json.dumps(newNote))
def get(self, project):
self.set_header("Content-type", "application/json")
p = Project(lims, id=project)
p.get(force=True)
# Sorted running notes, by date
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
sorted_running_notes = OrderedDict()
for k, v in sorted(running_notes.iteritems(), key=lambda t: t[0], reverse=True):
sorted_running_notes[k] = v
self.write(sorted_running_notes)
def get(self, project):
self.set_header("Content-type", "application/json")
p = Project(lims, id=project)
p.get(force=True)
links = json.loads(p.udf['Links']) if 'Links' in p.udf else {}
#Sort by descending date, then hopefully have deviations on top
sorted_links = OrderedDict()
for k, v in sorted(links.iteritems(), key=lambda t: t[0], reverse=True):
sorted_links[k] = v
sorted_links = OrderedDict(sorted(sorted_links.iteritems(), key=lambda (k,v): v['type']))
self.write(sorted_links)
def get(self, project):
self.set_header("Content-type", "application/json")
p = Project(lims, id=project)
p.get(force=True)
links = json.loads(p.udf['Links']) if 'Links' in p.udf else {}
#Sort by descending date, then hopefully have deviations on top
sorted_links = OrderedDict()
for k, v in sorted(links.items(), key=lambda t: t[0], reverse=True):
sorted_links[k] = v
sorted_links = OrderedDict(sorted(sorted_links.items(), key=lambda k: k[1]['type']))
self.write(sorted_links)
def get(self, project):
self.set_header("Content-type", "application/json")
p = Project(lims, id=project)
try:
p.get(force=True)
except:
raise tornado.web.HTTPError(404, reason='Project not found: {}'.format(project))
# self.set_status(404)
# self.write({})
else:
# Sorted running notes, by date
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
sorted_running_notes = OrderedDict()
for k, v in sorted(running_notes.iteritems(), key=lambda t: t[0], reverse=True):
sorted_running_notes[k] = v
self.write(sorted_running_notes)
def get(self, project):
self.set_header("Content-type", "application/json")
p = Project(lims, id=project)
try:
p.get(force=True)
except:
raise tornado.web.HTTPError(404, reason='Project not found: {}'.format(project))
# self.set_status(404)
# self.write({})
else:
# Sorted running notes, by date
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
sorted_running_notes = OrderedDict()
for k, v in sorted(running_notes.items(), key=lambda t: t[0], reverse=True):
sorted_running_notes[k] = v
self.write(sorted_running_notes)
def post(self, project):
note = self.get_argument('note', '')
user = self.get_secure_cookie('user')
email = self.get_secure_cookie('email')
if not note:
self.set_status(400)
self.finish('<html><body>No project id or note parameters found</body></html>')
else:
newNote = {'user': user, 'email': email, 'note': note}
p = Project(lims, id=project)
p.get(force=True)
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
running_notes[str(datetime.datetime.now())] = newNote
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
self.set_status(201)
self.write(json.dumps(newNote))
def make_project_running_note(application, project, note, category, user, email):
timestamp = datetime.datetime.strftime(datetime.datetime.now(), '%Y-%m-%d %H:%M:%S')
newNote = {'user': user, 'email': email, 'note': note, 'category' : category, 'timestamp': timestamp}
p = Project(lims, id=project)
p.get(force=True)
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
running_notes.update({timestamp: newNote})
# Saving running note in LIMS
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
#saving running notes directly in genstat, because reasons.
v=application.projects_db.view("project/project_id")
for row in v[project]:
doc_id=row.value
doc=application.projects_db.get(doc_id)
doc['details']['running_notes']=json.dumps(running_notes)
application.projects_db.save(doc)
return newNote
def make_project_running_note(application, project, note, category, user, email):
timestamp = datetime.datetime.strftime(datetime.datetime.now(), '%Y-%m-%d %H:%M:%S')
newNote = {'user': user, 'email': email, 'note': note, 'category' : category, 'timestamp': timestamp}
p = Project(lims, id=project)
p.get(force=True)
running_notes = json.loads(p.udf['Running Notes']) if 'Running Notes' in p.udf else {}
running_notes.update({timestamp: newNote})
# Saving running note in LIMS
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
p.get(force=True)
#Retry once more
if p.udf['Running Notes'] != json.dumps(running_notes):
p.udf['Running Notes'] = json.dumps(running_notes)
p.put()
p.get(force=True)
#In the rare case saving to LIMS does not work
assert (p.udf['Running Notes'] == json.dumps(running_notes)), "The Running note wasn't saved in LIMS!"
#saving running notes directly in genstat, because reasons.
v=application.projects_db.view("project/project_id")
for row in v[project]:
doc_id=row.value
doc=application.projects_db.get(doc_id)
doc['details']['running_notes']=json.dumps(running_notes)
application.projects_db.save(doc)
#### Check and send mail to tagged users
pattern = re.compile("(@)([a-zA-Z0-9.-]+)")
userTags = pattern.findall(note)
if userTags:
RunningNotesDataHandler.notify_tagged_user(application, userTags, project, note, category, user, timestamp)
####
return newNote
