def __init__(self,
genome,
twobit_file=None,
remote_fn=None,
groups=None,
trackdb=None,
genome_file_obj=None,
html_string=None,
**kwargs):
"""
Represents a genome stanza within a "genomes.txt" file for a non-UCSC genome.
The file itself is represented by a :class:`GenomesFile` object.
"""
HubComponent.__init__(self)
Genome.__init__(self, genome, trackdb=trackdb, genome_file_obj=genome_file_obj)
self.local_fn = twobit_file
self.remote_fn = remote_fn
self.html_string = html_string
if groups is not None:
self.add_groups(groups)
else:
self.groups = None
self._orig_kwargs = kwargs
self.add_params(**kwargs)
def __init__(self,
genome,
twobit_file=None,
remote_fn=None,
groups=None,
trackdb=None,
genome_file_obj=None,
html_string=None,
**kwargs):
"""
Represents a genome stanza within a "genomes.txt" file for a non-UCSC genome.
The file itself is represented by a :class:`GenomesFile` object.
"""
HubComponent.__init__(self)
Genome.__init__(self,
genome,
trackdb=trackdb,
genome_file_obj=genome_file_obj)
self.local_fn = twobit_file
self.remote_fn = remote_fn
self.html_string = html_string
if groups is not None:
self.add_groups(groups)
else:
self.groups = None
self._orig_kwargs = kwargs
self.add_params(**kwargs)
def __init__(self, x, y, direction, length):
self.start_x = x
self.start_y = y
self.body = []
self.direction = direction
self.alive = True
self.left_to_live = 200
self.vision = []
Genome.__init__(self, 24, 4)
for i in range(length):
self.body.append((x + i * -direction[0], y + i * -direction[1]))
