def generate(inputFile, paramFile, outFile, seed=1, nEvents=None):

    firstEvent = 0
    dy = 10.
    vessel_design = 5
    shield_design = 8
    mcEngine = 'TGeant4'
    sameSeed = seed
    theSeed = 1
    phiRandom = False  # only relevant for muon background generator
    followMuon = True  # only transport muons for a fast muon only background
    print('FairShip setup to produce', nEvents, 'events')
    r.gRandom.SetSeed(theSeed)
    ship_geo = ConfigRegistry.loadpy('$FAIRSHIP/geometry/geometry_config.py',
                                     Yheight=dy,
                                     tankDesign=vessel_design,
                                     muShieldDesign=shield_design,
                                     muShieldGeo=paramFile)
    run = r.FairRunSim()
    run.SetName(mcEngine)  # Transport engine
    run.SetOutputFile(outFile)  # Output file
    # user configuration file default g4Config.C
    run.SetUserConfig('g4Config.C')
    modules = shipDet_conf.configure(run, ship_geo)
    primGen = r.FairPrimaryGenerator()
    primGen.SetTarget(ship_geo.target.z0 + 50 * u.m, 0.)
    MuonBackgen = r.MuonBackGenerator()
    MuonBackgen.Init(inputFile, firstEvent, phiRandom)
    MuonBackgen.SetSmearBeam(3 * u.cm)  # beam size mimicking spiral
    if sameSeed:
        MuonBackgen.SetSameSeed(sameSeed)
    primGen.AddGenerator(MuonBackgen)
    nEvents = MuonBackgen.GetNevents() - 1
    print('Process ', nEvents, ' from input file, with Phi random=', phiRandom)
    if followMuon:
        modules['Veto'].SetFastMuon()
    run.SetGenerator(primGen)
    run.SetStoreTraj(r.kFALSE)
    run.Init()
    print('Initialised run.')
    geomGeant4.addVMCFields(ship_geo, '', True)
    print('Start run of {} events.'.format(nEvents))
    run.Run(nEvents)
    print('Finished simulation of {} events.'.format(nEvents))
Exemplo n.º 2
0
    def run_ship(self, phiRandom=False, followMuon=True, n_events=10, first_event=0):
        """
        phiRandom = False  # only relevant for muon background generator
        followMuon = True  # only transport muons for a fast muon only background
        """
        r.gErrorIgnoreLevel = r.kWarning
        r.gSystem.Load('libpythia8')

        print ('FairShip setup to produce', n_events, 'events')
        r.gRandom.SetSeed(self.theSeed)
        ship_geo = ConfigRegistry.loadpy(
            '$FAIRSHIP/geometry/geometry_config.py',
            Yheight=self.dy,
            tankDesign=self.vessel_design,
            muShieldDesign=self.shield_design,
            muShieldGeo=self.shield_geo_file)

        run = r.FairRunSim()
        run.SetName(self.mcEngine)  # Transport engine
        run.SetOutputFile(self.output_file)  # Output file
        # user configuration file default g4Config.C
        run.SetUserConfig('g4Config.C')
        modules = shipDet_conf.configure(run, ship_geo)
        primGen = r.FairPrimaryGenerator()
        primGen.SetTarget(ship_geo.target.z0 + 50 * u.m, 0.)
        MuonBackgen = r.MuonBackGenerator()
        MuonBackgen.Init(self.input_file, first_event, phiRandom)
        MuonBackgen.SetSmearBeam(3 * u.cm)  # beam size mimicking spiral
        if self.same_seed:
            MuonBackgen.SetSameSeed(self.same_seed)
        primGen.AddGenerator(MuonBackgen)
        if not n_events:
            n_events = MuonBackgen.GetNevents()
        else:
            n_events = min(n_events, MuonBackgen.GetNevents())
        print ('Process ', n_events, ' from input file, with Phi random=', phiRandom)
        if followMuon:
            modules['Veto'].SetFastMuon()
        run.SetGenerator(primGen)
        run.SetStoreTraj(r.kFALSE)
        run.Init()
        print ('Initialised run.')
        # geomGeant4.setMagnetField()
        if hasattr(ship_geo.Bfield, "fieldMap"):
            fieldMaker = geomGeant4.addVMCFields(ship_geo, '', True)
        print ('Start run of {} events.'.format(n_events))
        run.Run(n_events)
        print ('Finished simulation of {} events.'.format(n_events))

        geofile_output_path = os.path.join(self.output_dir,
                                           "geofile_full.fe_{}_n_events_{}.root" .format(first_event, n_events))
        run.CreateGeometryFile(geofile_output_path)
        # save ShipGeo dictionary in geofile
        saveBasicParameters.execute(geofile_output_path, ship_geo)
        return run
Exemplo n.º 3
0
def create_csv_field_map(options):
    r.gErrorIgnoreLevel = r.kWarning
    r.gSystem.Load('libpythia8')

    ship_geo = ConfigRegistry.loadpy(
        '$FAIRSHIP/geometry/geometry_config.py',
        Yheight=globalDesigns["dy"],
        tankDesign=globalDesigns["dv"],
        nuTauTargetDesign=globalDesigns["nud"],
        CaloDesign=globalDesigns["caloDesign"],
        strawDesign=globalDesigns["strawDesign"],
        muShieldDesign=options.ds,
        muShieldStepGeo=options.muShieldStepGeo,
        muShieldWithCobaltMagnet=options.muShieldWithCobaltMagnet,
        muShieldGeo=options.geofile)

    ship_geo.muShield.WithConstField = True

    run = r.FairRunSim()
    run.SetName('TGeant4')  # Transport engine
    run.SetOutputFile("tmp_file")  # Output file
    # user configuration file default g4Config.C
    run.SetUserConfig('g4Config.C')
    modules = shipDet_conf.configure(run, ship_geo)
    primGen = r.FairPrimaryGenerator()
    primGen.SetTarget(ship_geo.target.z0 + 70.845 * u.m, 0.)
    #
    run.SetGenerator(primGen)
    run.SetStoreTraj(r.kFALSE)
    run.Init()
    fieldMaker = geomGeant4.addVMCFields(ship_geo, '', True)

    field_center, shield_half_length = ShieldUtils.find_shield_center(ship_geo)
    print("SHIELD ONLY: CENTER: {}, HALFLENGTH: {}, half_X: {}, half_Y: {}".
          format(field_center, shield_half_length,
                 ship_geo.muShield.half_X_max, ship_geo.muShield.half_Y_max))
    fieldMaker.generateFieldMap(
        os.path.expandvars("$FAIRSHIP/files/fieldMap.csv"), 2.5,
        ship_geo.muShield.half_X_max, ship_geo.muShield.half_Y_max,
        shield_half_length, field_center)
Exemplo n.º 4
0
run = ROOT.FairRunSim()
run.SetName("TGeant4")  # Transport engine
run.SetOutputFile("dummy")  # Output file
run.SetUserConfig("g4Config_basic.C"
                  )  # geant4 transport not used, only needed for the mag field
rtdb = run.GetRuntimeDb()
# -----Create geometry----------------------------------------------
print('a')
modules = shipDet_conf.configure(run, ShipGeo)
print('b')
run.Init()
print('c')
import geomGeant4
print('d')
if hasattr(ShipGeo.Bfield, "fieldMap"):
    fieldMaker = geomGeant4.addVMCFields(ShipGeo, '', True)
print('e')
sGeo = ROOT.gGeoManager
print('f')
geoMat = ROOT.genfit.TGeoMaterialInterface()
print('g')
ROOT.genfit.MaterialEffects.getInstance().init(geoMat)
print('h')
bfield = ROOT.genfit.FairShipFields()
print('i')
fM = ROOT.genfit.FieldManager.getInstance()
print('j')
fM.init(bfield)
print('k')
volDict = {}
i = 0
Exemplo n.º 5
0
 ut.bookHist(h,'chi2','Chi2/DOF',100,0.,20.)

import shipDet_conf
run = ROOT.FairRunSim()
run.SetName("TGeant4")  # Transport engine
run.SetOutputFile(ROOT.TMemFile('output', 'recreate'))  # Output file
run.SetUserConfig("g4Config_basic.C") # geant4 transport not used, only needed for creating VMC field
rtdb = run.GetRuntimeDb()
# -----Create geometry----------------------------------------------
modules = shipDet_conf.configure(run,ShipGeo)
# run.Init()
fgeo.FAIRGeom
import geomGeant4

if hasattr(ShipGeo.Bfield,"fieldMap"):
  fieldMaker = geomGeant4.addVMCFields(ShipGeo, '', True,withVirtualMC = False)

# make global variables
builtin.debug    = debug
builtin.fieldMaker = fieldMaker
builtin.pidProton = pidProton
builtin.withT0 = withT0
builtin.realPR = realPR
builtin.vertexing = vertexing
builtin.ecalGeoFile = ecalGeoFile
builtin.ShipGeo = ShipGeo
builtin.modules = modules
builtin.EcalDebugDraw  = EcalDebugDraw
builtin.withNoStrawSmearing = withNoStrawSmearing
builtin.h    = h
builtin.log  = log
Exemplo n.º 6
0
                            20 * u.m, 20 * u.m, 200. * u.m)
    trajFilter.SetMomentumCutP(0.1 * u.GeV)
    trajFilter.SetEnergyCut(0., 400. * u.GeV)
    trajFilter.SetStorePrimaries(ROOT.kTRUE)
    trajFilter.SetStoreSecondaries(ROOT.kTRUE)

# The VMC sets the fields using the "/mcDet/setIsLocalMagField true" option in "gconfig/g4config.in"
import geomGeant4
# geomGeant4.setMagnetField() # replaced by VMC, only has effect if /mcDet/setIsLocalMagField  false

# Define extra VMC B fields not already set by the geometry definitions, e.g. a global field,
# any field maps, or defining if any volumes feel only the local or local+global field.
# For now, just keep the fields already defined by the C++ code, i.e comment out the fieldMaker
if charm == 0:  # charm and muflux testbeam not yet updated for using the new bfield interface
    if hasattr(ship_geo.Bfield, "fieldMap"):
        fieldMaker = geomGeant4.addVMCFields(ship_geo, '', True)

# Print VMC fields and associated geometry objects
if debug > 0:
    geomGeant4.printVMCFields()
    geomGeant4.printWeightsandFields(onlyWithField = True,\
                exclude=['DecayVolume','Tr1','Tr2','Tr3','Tr4','Veto','Ecal','Hcal','MuonDetector','SplitCal'])
# Plot the field example
#fieldMaker.plotField(1, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-300.0, 300.0, 6.0), 'Bzx.png')
#fieldMaker.plotField(2, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-400.0, 400.0, 6.0), 'Bzy.png')

if inactivateMuonProcesses:
    ROOT.gROOT.ProcessLine('#include "Geant4/G4ProcessTable.hh"')
    mygMC = ROOT.TGeant4.GetMC()
    mygMC.ProcessGeantCommand("/process/inactivate muPairProd")
    mygMC.ProcessGeantCommand("/process/inactivate muBrems")
Exemplo n.º 7
0
    trajFilter.SetVertexCut(-20 * u.m, -20 * u.m, ship_geo.target.z0 - 1 * u.m,
                            20 * u.m, 20 * u.m, 200. * u.m)
    trajFilter.SetMomentumCutP(0.1 * u.GeV)
    trajFilter.SetEnergyCut(0., 400. * u.GeV)
    trajFilter.SetStorePrimaries(ROOT.kTRUE)
    trajFilter.SetStoreSecondaries(ROOT.kTRUE)

# The VMC sets the fields using the "/mcDet/setIsLocalMagField true" option in "gconfig/g4config.in"
import geomGeant4
# geomGeant4.setMagnetField() # replaced by VMC, only has effect if /mcDet/setIsLocalMagField  false

# Define extra VMC B fields not already set by the geometry definitions, e.g. a global field,
# any field maps, or defining if any volumes feel only the local or local+global field.
# For now, just keep the fields already defined by the C++ code, i.e comment out the fieldMaker
if hasattr(ship_geo.Bfield, "fieldMap"):
    fieldMaker = geomGeant4.addVMCFields(ship_geo.Bfield.fieldMap,
                                         ship_geo.Bfield.z, True)

# Print VMC fields and associated geometry objects
if debug > 0:
    geomGeant4.printVMCFields()
    geomGeant4.printWeightsandFields(onlyWithField = True,\
                exclude=['DecayVolume','Tr1','Tr2','Tr3','Tr4','Veto','Ecal','Hcal','MuonDetector','SplitCal'])
# Plot the field example
#fieldMaker.plotField(1, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-300.0, 300.0, 6.0), 'Bzx.png')
#fieldMaker.plotField(2, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-400.0, 400.0, 6.0), 'Bzy.png')

if inactivateMuonProcesses:
    ROOT.gROOT.ProcessLine('#include "Geant4/G4ProcessTable.hh"')
    mygMC = ROOT.TGeant4.GetMC()
    mygMC.ProcessGeantCommand("/process/inactivate muPairProd")
    mygMC.ProcessGeantCommand("/process/inactivate muBrems")
Exemplo n.º 8
0
 ut.bookHist(h,'chi2','Chi2/DOF',100,0.,20.)

import shipDet_conf
run = ROOT.FairRunSim()
run.SetName("TGeant4")  # Transport engine
run.SetOutputFile(ROOT.TMemFile('output', 'recreate'))  # Output file
run.SetUserConfig("g4Config_basic.C") # geant4 transport not used, only needed for creating VMC field
rtdb = run.GetRuntimeDb()
# -----Create geometry----------------------------------------------
modules = shipDet_conf.configure(run,ShipGeo)
# run.Init()
fgeo.FAIRGeom
import geomGeant4

if hasattr(ShipGeo.Bfield,"fieldMap"):
  fieldMaker = geomGeant4.addVMCFields(ShipGeo, '', True,withVirtualMC = False)

# make global variables
builtin.debug    = debug
builtin.fieldMaker = fieldMaker
builtin.pidProton = pidProton
builtin.withT0 = withT0
builtin.realPR = realPR
builtin.vertexing = vertexing
builtin.ecalGeoFile = ecalGeoFile
builtin.ShipGeo = ShipGeo
builtin.modules = modules
builtin.EcalDebugDraw  = EcalDebugDraw
builtin.withNoStrawSmearing = withNoStrawSmearing
builtin.h    = h
builtin.log  = log
Exemplo n.º 9
0
ecalGeoFile = ShipGeo.ecal.File
dy = ShipGeo.Yheight/u.m

# -----Create geometry----------------------------------------------
import shipDet_conf
run = ROOT.FairRunSim()
run.SetName("TGeant4")  # Transport engine
run.SetOutputFile(ROOT.TMemFile('output', 'recreate'))  # Output file
run.SetUserConfig("g4Config_basic.C") # geant4 transport not used, only needed for the mag field
rtdb = run.GetRuntimeDb()
# -----Create geometry----------------------------------------------
modules = shipDet_conf.configure(run,ShipGeo)
run.Init()
import geomGeant4
if hasattr(ShipGeo.Bfield,"fieldMap"):
  fieldMaker = geomGeant4.addVMCFields(ShipGeo, '', True)

sGeo   = ROOT.gGeoManager
geoMat =  ROOT.genfit.TGeoMaterialInterface()
ROOT.genfit.MaterialEffects.getInstance().init(geoMat)
bfield = ROOT.genfit.FairShipFields()
fM = ROOT.genfit.FieldManager.getInstance()
fM.init(bfield)

volDict = {}
i=0
for x in ROOT.gGeoManager.GetListOfVolumes():
 volDict[i]=x.GetName()
 i+=1

Exemplo n.º 10
0
def run_track_pattern_recognition(input_file, geo_file, output_file, method):
    """
    Runs all steps of track pattern recognition.
    Parameters
    ----------
    input_file : string
        Path to an input .root file with events.
    geo_file : string
        Path to a file with SHiP geometry.
    output_file : string
        Path to an output .root file with quality plots.
    method : string
        Name of a track pattern recognition method.
    """

    ############################################# Load SHiP geometry ###################################################

    # Check geo file
    try:
        fgeo = ROOT.TFile(geo_file)
    except:
        print("An error with opening the ship geo file.")
        raise

    sGeo = fgeo.FAIRGeom

    # Prepare ShipGeo dictionary
    if not fgeo.FindKey('ShipGeo'):

        if sGeo.GetVolume('EcalModule3'):
            ecalGeoFile = "ecal_ellipse6x12m2.geo"
        else:
            ecalGeoFile = "ecal_ellipse5x10m2.geo"

        if dy:
            ShipGeo = ConfigRegistry.loadpy(
                "$FAIRSHIP/geometry/geometry_config.py",
                Yheight=dy,
                EcalGeoFile=ecalGeoFile)
        else:
            ShipGeo = ConfigRegistry.loadpy(
                "$FAIRSHIP/geometry/geometry_config.py",
                EcalGeoFile=ecalGeoFile)

    else:
        upkl = Unpickler(fgeo)
        ShipGeo = upkl.load('ShipGeo')

    # Globals
    builtin.ShipGeo = ShipGeo

    ############################################# Load SHiP modules ####################################################

    import shipDet_conf
    run = ROOT.FairRunSim()
    run.SetName("TGeant4")  # Transport engine
    run.SetOutputFile("dummy")  # Output file
    run.SetUserConfig(
        "g4Config_basic.C"
    )  # geant4 transport not used, only needed for the mag field
    rtdb = run.GetRuntimeDb()

    modules = shipDet_conf.configure(run, ShipGeo)
    run.Init()

    #run = ROOT.FairRunSim()
    #modules = shipDet_conf.configure(run,ShipGeo)

    ######################################### Load SHiP magnetic field #################################################

    import geomGeant4
    if hasattr(ShipGeo.Bfield, "fieldMap"):
        fieldMaker = geomGeant4.addVMCFields(ShipGeo,
                                             '',
                                             True,
                                             withVirtualMC=False)
    else:
        print("no fieldmap given, geofile too old, not anymore support")
        exit(-1)
    sGeo = fgeo.FAIRGeom
    geoMat = ROOT.genfit.TGeoMaterialInterface()
    ROOT.genfit.MaterialEffects.getInstance().init(geoMat)
    bfield = ROOT.genfit.FairShipFields()
    bfield.setField(fieldMaker.getGlobalField())
    fM = ROOT.genfit.FieldManager.getInstance()
    fM.init(bfield)

    ############################################# Load inpur data file #################################################

    # Check input file
    try:
        fn = ROOT.TFile(input_file, 'update')
    except:
        print("An error with opening the input data file.")
        raise

    sTree = fn.cbmsim
    sTree.Write()

    ############################################# Create hists #########################################################

    h = init_book_hist()

    ########################################## Start Track Pattern Recognition #########################################
    import shipPatRec

    # Init book of hists for the quality measurements
    metrics = {
        'n_hits': [],
        'reconstructible': 0,
        'passed_y12': 0,
        'passed_stereo12': 0,
        'passed_12': 0,
        'passed_y34': 0,
        'passed_stereo34': 0,
        'passed_34': 0,
        'passed_combined': 0,
        'reco_passed': 0,
        'reco_passed_no_clones': 0,
        'frac_y12': [],
        'frac_stereo12': [],
        'frac_12': [],
        'frac_y34': [],
        'frac_stereo34': [],
        'frac_34': [],
        'reco_frac_tot': [],
        'reco_mc_p': [],
        'reco_mc_theta': [],
        'fitted_p': [],
        'fitted_pval': [],
        'fitted_chi': [],
        'fitted_x': [],
        'fitted_y': [],
        'fitted_z': [],
        'fitted_mass': []
    }

    # Start event loop
    nEvents = sTree.GetEntries()

    for iEvent in range(nEvents):

        if iEvent % 1000 == 0:
            print('Event ', iEvent)

        ########################################### Select one event ###################################################

        rc = sTree.GetEvent(iEvent)

        ########################################### Reconstructible tracks #############################################

        reconstructible_tracks = getReconstructibleTracks(
            iEvent, sTree, sGeo, ShipGeo)

        metrics['reconstructible'] += len(reconstructible_tracks)
        for i_reco in reconstructible_tracks:
            h['TracksPassed'].Fill("Reconstructible tracks", 1)
            h['TracksPassedU'].Fill("Reconstructible tracks", 1)

        in_y12 = []
        in_stereo12 = []
        in_12 = []
        in_y34 = []
        in_stereo34 = []
        in_34 = []
        in_combo = []

        found_track_ids = []
        n_tracks = len(reconstructible_tracks)
        n_recognized = 0
        n_clones = 0
        n_ghosts = 0
        n_others = 0

        min_eff = 0.

        ########################################## Recognized tracks ###################################################

        nTracklets = sTree.Tracklets.GetEntriesFast()

        for i_track in range(nTracklets):

            atracklet = sTree.Tracklets[i_track]

            if atracklet.getType() != 1:  # this is a not full track (tracklet)
                continue

            atrack = atracklet.getList()

            if atrack.size() == 0:
                continue

            hits = {
                'X': [],
                'Y': [],
                'Z': [],
                'DetID': [],
                'TrackID': [],
                'Pz': [],
                'Px': [],
                'Py': [],
                'dist2Wire': [],
                'Pdg': []
            }

            for ihit in atrack:
                ahit = sTree.strawtubesPoint[ihit]
                hits['X'] += [ahit.GetX()]
                hits['Y'] += [ahit.GetY()]
                hits['Z'] += [ahit.GetZ()]
                hits['DetID'] += [ahit.GetDetectorID()]
                hits['TrackID'] += [ahit.GetTrackID()]
                hits['Pz'] += [ahit.GetPz()]
                hits['Px'] += [ahit.GetPx()]
                hits['Py'] += [ahit.GetPy()]
                hits['dist2Wire'] += [ahit.dist2Wire()]
                hits['Pdg'] += [ahit.PdgCode()]

            # List to numpy arrays
            for key in hits.keys():
                hits[key] = numpy.array(hits[key])

            # Decoding
            statnb, vnb, pnb, lnb, snb = decodeDetectorID(hits['DetID'])
            is_stereo = ((vnb == 1) + (vnb == 2))
            is_y = ((vnb == 0) + (vnb == 3))
            is_before = ((statnb == 1) + (statnb == 2))
            is_after = ((statnb == 3) + (statnb == 4))

            # Metrics
            metrics['n_hits'] += [get_n_hits(hits['TrackID'])]

            # Tracks passed
            frac_y12, tmax_y12 = fracMCsame(hits['TrackID'][is_before * is_y])
            n_hits_y12 = get_n_hits(hits['TrackID'][is_before * is_y])
            frac_stereo12, tmax_stereo12 = fracMCsame(
                hits['TrackID'][is_before * is_stereo])
            n_hits_stereo12 = get_n_hits(hits['TrackID'][is_before *
                                                         is_stereo])
            frac_12, tmax_12 = fracMCsame(hits['TrackID'][is_before])
            n_hits_12 = get_n_hits(hits['TrackID'][is_before])

            frac_y34, tmax_y34 = fracMCsame(hits['TrackID'][is_after * is_y])
            n_hits_y34 = get_n_hits(hits['TrackID'][is_after * is_y])
            frac_stereo34, tmax_stereo34 = fracMCsame(
                hits['TrackID'][is_after * is_stereo])
            n_hits_stereo34 = get_n_hits(hits['TrackID'][is_after * is_stereo])
            frac_34, tmax_34 = fracMCsame(hits['TrackID'][is_after])
            n_hits_34 = get_n_hits(hits['TrackID'][is_after])
            frac_tot, tmax_tot = fracMCsame(hits['TrackID'])
            n_hits_tot = get_n_hits(hits['TrackID'])

            if tmax_y12 == tmax_stereo12 and tmax_y12 == tmax_y34 and tmax_y12 == tmax_stereo34:
                if frac_y12 >= min_eff and frac_stereo12 >= min_eff and frac_y34 >= min_eff and frac_stereo34 >= min_eff:

                    if tmax_y12 in reconstructible_tracks and tmax_y12 not in found_track_ids:
                        n_recognized += 1
                        found_track_ids.append(tmax_y12)
                    elif tmax_y12 in reconstructible_tracks and tmax_y12 in found_track_ids:
                        n_clones += 1
                    elif tmax_y12 not in reconstructible_tracks:
                        n_others += 1

                else:
                    n_ghosts += 1
            else:
                n_ghosts += 1

            is_reconstructed = 0
            is_reconstructed_no_clones = 0

            if tmax_y12 in reconstructible_tracks:
                metrics['passed_y12'] += 1
                metrics['frac_y12'] += [frac_y12]
                h['TracksPassed'].Fill("Y view station 1&2", 1)
                if tmax_y12 not in in_y12:
                    h['TracksPassedU'].Fill("Y view station 1&2", 1)
                    in_y12.append(tmax_y12)

                if tmax_stereo12 == tmax_y12:
                    metrics['passed_stereo12'] += 1
                    metrics['frac_stereo12'] += [frac_stereo12]
                    h['TracksPassed'].Fill("Stereo station 1&2", 1)
                    if tmax_stereo12 not in in_stereo12:
                        h['TracksPassedU'].Fill("Stereo station 1&2", 1)
                        in_stereo12.append(tmax_stereo12)

                    if tmax_12 == tmax_y12:
                        metrics['passed_12'] += 1
                        metrics['frac_12'] += [frac_12]
                        h['TracksPassed'].Fill("station 1&2", 1)
                        if tmax_12 not in in_12:
                            h['TracksPassedU'].Fill("station 1&2", 1)
                            in_12.append(tmax_12)

                        if tmax_y34 in reconstructible_tracks:
                            metrics['passed_y34'] += 1
                            metrics['frac_y34'] += [frac_y34]
                            h['TracksPassed'].Fill("Y view station 3&4", 1)
                            if tmax_y34 not in in_y34:
                                h['TracksPassedU'].Fill(
                                    "Y view station 3&4", 1)
                                in_y34.append(tmax_y34)

                            if tmax_stereo34 == tmax_y34:
                                metrics['passed_stereo34'] += 1
                                metrics['frac_stereo34'] += [frac_stereo34]
                                h['TracksPassed'].Fill("Stereo station 3&4", 1)
                                if tmax_stereo34 not in in_stereo34:
                                    h['TracksPassedU'].Fill(
                                        "Stereo station 3&4", 1)
                                    in_stereo34.append(tmax_stereo34)

                                if tmax_34 == tmax_y34:
                                    metrics['passed_34'] += 1
                                    metrics['frac_34'] += [frac_34]
                                    h['TracksPassed'].Fill("station 3&4", 1)
                                    if tmax_34 not in in_34:
                                        h['TracksPassedU'].Fill(
                                            "station 3&4", 1)
                                        in_34.append(tmax_34)

                                    if tmax_12 == tmax_34:
                                        metrics['passed_combined'] += 1
                                        h['TracksPassed'].Fill(
                                            "Combined stations 1&2/3&4", 1)
                                        metrics['reco_passed'] += 1
                                        is_reconstructed = 1
                                        if tmax_34 not in in_combo:
                                            h['TracksPassedU'].Fill(
                                                "Combined stations 1&2/3&4", 1)
                                            metrics[
                                                'reco_passed_no_clones'] += 1
                                            in_combo.append(tmax_34)
                                            is_reconstructed_no_clones = 1

            # For reconstructed tracks
            if is_reconstructed == 0:
                continue

            metrics['reco_frac_tot'] += [frac_tot]

            # Momentum
            Pz = hits['Pz']
            Px = hits['Px']
            Py = hits['Py']

            p, px, py, pz = getPtruthFirst(sTree, tmax_tot)
            pt = math.sqrt(px**2 + py**2)

            Z_true = []
            X_true = []
            Y_true = []
            for ahit in sTree.strawtubesPoint:
                if ahit.GetTrackID() == tmax_tot:
                    az, ax, ay = ahit.GetZ(), ahit.GetX(), ahit.GetY()
                    Z_true.append(az)
                    X_true.append(ax)
                    Y_true.append(ay)

            metrics['reco_mc_p'] += [p]
            h['TracksPassed_p'].Fill(p, 1)

            # Direction
            Z = hits['Z'][(hits['TrackID'] == tmax_tot) * is_before]
            X = hits['X'][(hits['TrackID'] == tmax_tot) * is_before]
            Y = hits['Y'][(hits['TrackID'] == tmax_tot) * is_before]
            Z = Z - Z[0]
            X = X - X[0]
            Y = Y - Y[0]
            R = numpy.sqrt(X**2 + Y**2 + Z**2)
            Theta = numpy.arccos(Z[1:] / R[1:])
            theta = numpy.mean(Theta)

            metrics['reco_mc_theta'] += [theta]

            h['n_hits_reco_y12'].Fill(n_hits_y12)
            h['n_hits_reco_stereo12'].Fill(n_hits_stereo12)
            h['n_hits_reco_12'].Fill(n_hits_12)
            h['n_hits_reco_y34'].Fill(n_hits_y34)
            h['n_hits_reco_stereo34'].Fill(n_hits_stereo34)
            h['n_hits_reco_34'].Fill(n_hits_34)
            h['n_hits_reco'].Fill(n_hits_tot)

            h['n_hits_y12'].Fill(p, n_hits_y12)
            h['n_hits_stereo12'].Fill(p, n_hits_stereo12)
            h['n_hits_12'].Fill(p, n_hits_12)
            h['n_hits_y34'].Fill(p, n_hits_y34)
            h['n_hits_stereo34'].Fill(p, n_hits_stereo34)
            h['n_hits_34'].Fill(p, n_hits_34)
            h['n_hits_total'].Fill(p, n_hits_tot)

            h['frac_y12'].Fill(p, frac_y12)
            h['frac_stereo12'].Fill(p, frac_stereo12)
            h['frac_12'].Fill(p, frac_12)
            h['frac_y34'].Fill(p, frac_y34)
            h['frac_stereo34'].Fill(p, frac_stereo34)
            h['frac_34'].Fill(p, frac_34)
            h['frac_total'].Fill(p, frac_tot)

            h['frac_y12_dist'].Fill(frac_y12)
            h['frac_stereo12_dist'].Fill(frac_stereo12)
            h['frac_12_dist'].Fill(frac_12)
            h['frac_y34_dist'].Fill(frac_y34)
            h['frac_stereo34_dist'].Fill(frac_stereo34)
            h['frac_34_dist'].Fill(frac_34)
            h['frac_total_dist'].Fill(frac_tot)

            # Fitted track

            thetrack = sTree.FitTracks[i_track]

            fitStatus = thetrack.getFitStatus()
            thetrack.prune(
                "CFL"
            )  # http://sourceforge.net/p/genfit/code/HEAD/tree/trunk/core/include/Track.h#l280

            nmeas = fitStatus.getNdf()
            pval = fitStatus.getPVal()
            chi2 = fitStatus.getChi2() / nmeas

            metrics['fitted_pval'] += [pval]
            metrics['fitted_chi'] += [chi2]

            h['chi2fittedtracks'].Fill(chi2)
            h['pvalfittedtracks'].Fill(pval)

            try:

                fittedState = thetrack.getFittedState()
                fittedMom = fittedState.getMomMag()
                fittedMom = fittedMom  #*int(charge)

                px_fit, py_fit, pz_fit = fittedState.getMom().x(
                ), fittedState.getMom().y(), fittedState.getMom().z()
                p_fit = fittedMom
                pt_fit = math.sqrt(px_fit**2 + py_fit**2)

                metrics['fitted_p'] += [p_fit]
                perr = (p - p_fit) / p
                h['ptrue-p/ptrue'].Fill(perr)
                h['perr'].Fill(p, perr)
                h['perr_direction'].Fill(numpy.rad2deg(theta), perr)

                pterr = (pt - pt_fit) / pt
                h['pttrue-pt/pttrue'].Fill(pterr)

                pxerr = (px - px_fit) / px
                h['pxtrue-px/pxtrue'].Fill(pxerr)

                pyerr = (py - py_fit) / py
                h['pytrue-py/pytrue'].Fill(pyerr)

                pzerr = (pz - pz_fit) / pz
                h['pztrue-pz/pztrue'].Fill(pzerr)

                if math.fabs(p) > 0.0:
                    h['pvspfitted'].Fill(p, fittedMom)
                fittedtrackDir = fittedState.getDir()
                fittedx = math.degrees(math.acos(fittedtrackDir[0]))
                fittedy = math.degrees(math.acos(fittedtrackDir[1]))
                fittedz = math.degrees(math.acos(fittedtrackDir[2]))
                fittedmass = fittedState.getMass()
                h['momentumfittedtracks'].Fill(fittedMom)
                h['xdirectionfittedtracks'].Fill(fittedx)
                h['ydirectionfittedtracks'].Fill(fittedy)
                h['zdirectionfittedtracks'].Fill(fittedz)
                h['massfittedtracks'].Fill(fittedmass)

                metrics['fitted_x'] += [fittedx]
                metrics['fitted_y'] += [fittedy]
                metrics['fitted_z'] += [fittedz]
                metrics['fitted_mass'] += [fittedmass]

                Z_fit = []
                X_fit = []
                Y_fit = []
                for az in Z_true:
                    rc, pos, mom = extrapolateToPlane(thetrack, az)
                    Z_fit.append(pos.Z())
                    X_fit.append(pos.X())
                    Y_fit.append(pos.Y())

                for i in range(len(Z_true)):
                    xerr = abs(X_fit[i] - X_true[i])
                    yerr = abs(Y_fit[i] - Y_true[i])
                    h['abs(x - x-true)'].Fill(xerr)
                    h['abs(y - y-true)'].Fill(yerr)

                rmse_x = numpy.sqrt(
                    numpy.mean((numpy.array(X_fit) - numpy.array(X_true))**2))
                rmse_y = numpy.sqrt(
                    numpy.mean((numpy.array(Y_fit) - numpy.array(Y_true))**2))
                h['rmse_x'].Fill(rmse_x)
                h['rmse_y'].Fill(rmse_y)

            except:
                print("Problem with fitted state.")

        h['Reco_tracks'].Fill("N total", n_tracks)
        h['Reco_tracks'].Fill("N recognized tracks", n_recognized)
        h['Reco_tracks'].Fill("N clones", n_clones)
        h['Reco_tracks'].Fill("N ghosts", n_ghosts)
        h['Reco_tracks'].Fill("N others", n_others)

    ############################################# Save hists #########################################################

    save_hists(h, output_file)

    return metrics
Exemplo n.º 11
0
  trajFilter.SetVertexCut(-20*u.m, -20*u.m,ship_geo.target.z0-1*u.m, 20*u.m, 20*u.m, 200.*u.m)
  trajFilter.SetMomentumCutP(0.1*u.GeV)
  trajFilter.SetEnergyCut(0., 400.*u.GeV)
  trajFilter.SetStorePrimaries(ROOT.kTRUE)
  trajFilter.SetStoreSecondaries(ROOT.kTRUE)

# The VMC sets the fields using the "/mcDet/setIsLocalMagField true" option in "gconfig/g4config.in"
import geomGeant4
# geomGeant4.setMagnetField() # replaced by VMC, only has effect if /mcDet/setIsLocalMagField  false

# Define extra VMC B fields not already set by the geometry definitions, e.g. a global field,
# any field maps, or defining if any volumes feel only the local or local+global field.
# For now, just keep the fields already defined by the C++ code, i.e comment out the fieldMaker
if charm == 0:   # charm and muflux testbeam not yet updated for using the new bfield interface
 if hasattr(ship_geo.Bfield,"fieldMap"):
  fieldMaker = geomGeant4.addVMCFields(ship_geo, '', True)

# Print VMC fields and associated geometry objects
if debug > 0:
 geomGeant4.printVMCFields()
 geomGeant4.printWeightsandFields(onlyWithField = True,\
             exclude=['DecayVolume','Tr1','Tr2','Tr3','Tr4','Veto','Ecal','Hcal','MuonDetector','SplitCal'])
# Plot the field example
#fieldMaker.plotField(1, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-300.0, 300.0, 6.0), 'Bzx.png')
#fieldMaker.plotField(2, ROOT.TVector3(-9000.0, 6000.0, 50.0), ROOT.TVector3(-400.0, 400.0, 6.0), 'Bzy.png')

if inactivateMuonProcesses :
 ROOT.gROOT.ProcessLine('#include "Geant4/G4ProcessTable.hh"')
 mygMC = ROOT.TGeant4.GetMC()
 mygMC.ProcessGeantCommand("/process/inactivate muPairProd")
 mygMC.ProcessGeantCommand("/process/inactivate muBrems")
Exemplo n.º 12
0
gFairBaseContFact = ROOT.FairBaseContFact(
)  # required by change to FairBaseContFact to avoid TList::Clear errors
run = ROOT.FairRunSim()
run.SetName("TGeant4")  # Transport engine
run.SetOutputFile("dummy")  # Output file
run.SetUserConfig(
    "g4Config_basic.C"
)  # geant4 transport not used, only needed for creating VMC field
rtdb = run.GetRuntimeDb()
# -----Create geometry----------------------------------------------
modules = shipDet_conf.configure(run, ShipGeo)
run.Init()
import geomGeant4

if hasattr(ShipGeo.Bfield, "fieldMap"):
    fieldMaker = geomGeant4.addVMCFields(ShipGeo.Bfield.fieldMap,
                                         ShipGeo.Bfield.z, True)

# make global variables
builtin.debug = debug
builtin.pidProton = pidProton
builtin.withT0 = withT0
builtin.realPR = realPR
builtin.vertexing = vertexing
builtin.ecalGeoFile = ecalGeoFile
builtin.ShipGeo = ShipGeo
builtin.modules = modules
builtin.EcalDebugDraw = EcalDebugDraw
builtin.withNoStrawSmearing = withNoStrawSmearing
builtin.h = h
builtin.log = log
iEvent = 0
Exemplo n.º 13
0
def run_track_pattern_recognition(input_file, geo_file, output_file, method):
    """
    Runs all steps of track pattern recognition.
    Parameters
    ----------
    input_file : string
        Path to an input .root file with events.
    geo_file : string
        Path to a file with SHiP geometry.
    output_file : string
        Path to an output .root file with quality plots.
    method : string
        Name of a track pattern recognition method.
    """


    ############################################# Load SHiP geometry ###################################################

    # Check geo file
    try:
        fgeo = ROOT.TFile(geo_file)
    except:
        print "An error with opening the ship geo file."
        raise

    sGeo = fgeo.FAIRGeom

    # Prepare ShipGeo dictionary
    if not fgeo.FindKey('ShipGeo'):

        if sGeo.GetVolume('EcalModule3') :
            ecalGeoFile = "ecal_ellipse6x12m2.geo"
        else:
            ecalGeoFile = "ecal_ellipse5x10m2.geo"

        if dy:
            ShipGeo = ConfigRegistry.loadpy("$FAIRSHIP/geometry/geometry_config.py", Yheight = dy, EcalGeoFile = ecalGeoFile)
        else:
            ShipGeo = ConfigRegistry.loadpy("$FAIRSHIP/geometry/geometry_config.py", EcalGeoFile = ecalGeoFile)

    else:
        upkl    = Unpickler(fgeo)
        ShipGeo = upkl.load('ShipGeo')
    
    # Globals
    builtin.ShipGeo = ShipGeo

    ############################################# Load SHiP modules ####################################################

    import shipDet_conf
    run = ROOT.FairRunSim()
    run.SetName("TGeant4")  # Transport engine
    run.SetOutputFile("dummy")  # Output file
    run.SetUserConfig("g4Config_basic.C") # geant4 transport not used, only needed for the mag field
    rtdb = run.GetRuntimeDb()

    modules = shipDet_conf.configure(run,ShipGeo)
    run.Init()

    #run = ROOT.FairRunSim()
    #modules = shipDet_conf.configure(run,ShipGeo)


    ######################################### Load SHiP magnetic field #################################################


    import geomGeant4
    if hasattr(ShipGeo.Bfield,"fieldMap"):
      fieldMaker = geomGeant4.addVMCFields(ShipGeo, '', True, withVirtualMC = False)
    else:
      print "no fieldmap given, geofile too old, not anymore support"
      exit(-1)
    sGeo   = fgeo.FAIRGeom
    geoMat =  ROOT.genfit.TGeoMaterialInterface()
    ROOT.genfit.MaterialEffects.getInstance().init(geoMat)
    bfield = ROOT.genfit.FairShipFields()
    bfield.setField(fieldMaker.getGlobalField())
    fM = ROOT.genfit.FieldManager.getInstance()
    fM.init(bfield)


    ############################################# Load inpur data file #################################################

    # Check input file
    try:
        fn = ROOT.TFile(input_file,'update')
    except:
        print "An error with opening the input data file."
        raise

    sTree = fn.cbmsim
    sTree.Write()
    
    ############################################# Create hists #########################################################
    
    h = init_book_hist()

    ########################################## Start Track Pattern Recognition #########################################
    import shipPatRec

    # Init book of hists for the quality measurements
    metrics = {'n_hits': [], 
               'reconstructible': 0, 
               'passed_y12': 0, 'passed_stereo12': 0, 'passed_12': 0, 
               'passed_y34': 0, 'passed_stereo34': 0, 'passed_34': 0, 
               'passed_combined': 0, 'reco_passed': 0, 'reco_passed_no_clones': 0,
               'frac_y12': [], 'frac_stereo12': [], 'frac_12': [], 
               'frac_y34': [], 'frac_stereo34': [], 'frac_34': [], 
               'reco_frac_tot': [], 
               'reco_mc_p': [], 'reco_mc_theta': [], 
               'fitted_p': [], 'fitted_pval': [], 'fitted_chi': [], 
               'fitted_x': [], 'fitted_y': [], 'fitted_z': [], 'fitted_mass': []}

    # Start event loop
    nEvents   = sTree.GetEntries()
   

    for iEvent in range(nEvents):

        if iEvent%1000 == 0:
            print 'Event ', iEvent

        ########################################### Select one event ###################################################

        rc = sTree.GetEvent(iEvent)

        ########################################### Reconstructible tracks #############################################

        reconstructible_tracks = getReconstructibleTracks(iEvent, sTree, sGeo, ShipGeo)
        
        metrics['reconstructible'] += len(reconstructible_tracks)
        for i_reco in reconstructible_tracks:
            h['TracksPassed'].Fill("Reconstructible tracks", 1)
            h['TracksPassedU'].Fill("Reconstructible tracks", 1)
            
        in_y12 = []
        in_stereo12 = []
        in_12 = []
        in_y34 = []
        in_stereo34 = []
        in_34 = []
        in_combo = []

        found_track_ids = []
        n_tracks = len(reconstructible_tracks)
        n_recognized = 0
        n_clones = 0
        n_ghosts = 0
        n_others = 0

        min_eff = 0.
        
        ########################################## Recognized tracks ###################################################
        
        nTracklets = sTree.Tracklets.GetEntriesFast()
        
        for i_track in range(nTracklets):
            
            atracklet = sTree.Tracklets[i_track]
            
            if atracklet.getType() != 1: # this is a not full track (tracklet)
                continue
                
            atrack = atracklet.getList()
            
            if atrack.size() == 0:
                continue
            
            hits = {'X': [], 'Y': [], 'Z': [], 
                    'DetID': [], 'TrackID': [], 
                    'Pz': [], 'Px': [], 'Py': [], 
                    'dist2Wire': [], 'Pdg': []}
            
            for ihit in atrack:
                ahit = sTree.strawtubesPoint[ihit]
                hits['X'] += [ahit.GetX()]
                hits['Y'] += [ahit.GetY()]
                hits['Z'] += [ahit.GetZ()]
                hits['DetID'] += [ahit.GetDetectorID()]
                hits['TrackID'] += [ahit.GetTrackID()]
                hits['Pz'] += [ahit.GetPz()]
                hits['Px'] += [ahit.GetPx()]
                hits['Py'] += [ahit.GetPy()]
                hits['dist2Wire'] += [ahit.dist2Wire()]
                hits['Pdg'] += [ahit.PdgCode()]
                
            # List to numpy arrays
            for key in hits.keys():
                hits[key] = numpy.array(hits[key])
                
            # Decoding
            statnb, vnb, pnb, lnb, snb = decodeDetectorID(hits['DetID'])
            is_stereo = ((vnb == 1) + (vnb == 2))
            is_y = ((vnb == 0) + (vnb == 3))
            is_before = ((statnb == 1) + (statnb == 2))
            is_after = ((statnb == 3) + (statnb == 4)) 
                
            
            # Metrics
            metrics['n_hits'] += [get_n_hits(hits['TrackID'])]
            
            # Tracks passed
            frac_y12, tmax_y12 = fracMCsame(hits['TrackID'][is_before * is_y])
            n_hits_y12 = get_n_hits(hits['TrackID'][is_before * is_y])
            frac_stereo12, tmax_stereo12 = fracMCsame(hits['TrackID'][is_before * is_stereo])
            n_hits_stereo12 = get_n_hits(hits['TrackID'][is_before * is_stereo])
            frac_12, tmax_12 = fracMCsame(hits['TrackID'][is_before])
            n_hits_12 = get_n_hits(hits['TrackID'][is_before])
            
            frac_y34, tmax_y34 = fracMCsame(hits['TrackID'][is_after * is_y])
            n_hits_y34 = get_n_hits(hits['TrackID'][is_after * is_y])
            frac_stereo34, tmax_stereo34 = fracMCsame(hits['TrackID'][is_after * is_stereo])
            n_hits_stereo34 = get_n_hits(hits['TrackID'][is_after * is_stereo])
            frac_34, tmax_34 = fracMCsame(hits['TrackID'][is_after])
            n_hits_34 = get_n_hits(hits['TrackID'][is_after])
            frac_tot, tmax_tot = fracMCsame(hits['TrackID'])
            n_hits_tot = get_n_hits(hits['TrackID'])

            if tmax_y12 == tmax_stereo12 and tmax_y12 == tmax_y34 and tmax_y12 == tmax_stereo34:
                if frac_y12 >= min_eff and frac_stereo12 >= min_eff and frac_y34 >= min_eff and frac_stereo34 >= min_eff:

                    if tmax_y12 in reconstructible_tracks and tmax_y12 not in found_track_ids:
                        n_recognized += 1
                        found_track_ids.append(tmax_y12)
                    elif tmax_y12 in reconstructible_tracks and tmax_y12 in found_track_ids:
                        n_clones += 1
                    elif tmax_y12 not in reconstructible_tracks:
                        n_others += 1

                else:
                    n_ghosts += 1
            else:
                n_ghosts += 1
            
            is_reconstructed = 0
            is_reconstructed_no_clones = 0
            
            
            if tmax_y12 in reconstructible_tracks:
                metrics['passed_y12'] += 1
                metrics['frac_y12'] += [frac_y12]
                h['TracksPassed'].Fill("Y view station 1&2", 1)
                if tmax_y12 not in in_y12:
                    h['TracksPassedU'].Fill("Y view station 1&2", 1)
                    in_y12.append(tmax_y12)
                
                if tmax_stereo12 == tmax_y12:
                    metrics['passed_stereo12'] += 1
                    metrics['frac_stereo12'] += [frac_stereo12]
                    h['TracksPassed'].Fill("Stereo station 1&2", 1)
                    if tmax_stereo12 not in in_stereo12:
                        h['TracksPassedU'].Fill("Stereo station 1&2", 1)
                        in_stereo12.append(tmax_stereo12)
                    
                    if tmax_12 == tmax_y12:
                        metrics['passed_12'] += 1
                        metrics['frac_12'] += [frac_12]
                        h['TracksPassed'].Fill("station 1&2", 1)
                        if tmax_12 not in in_12:
                            h['TracksPassedU'].Fill("station 1&2", 1)
                            in_12.append(tmax_12)
                        
                        if tmax_y34 in reconstructible_tracks:
                            metrics['passed_y34'] += 1
                            metrics['frac_y34'] += [frac_y34]
                            h['TracksPassed'].Fill("Y view station 3&4", 1)
                            if tmax_y34 not in in_y34:
                                h['TracksPassedU'].Fill("Y view station 3&4", 1)
                                in_y34.append(tmax_y34)
                            
                            if tmax_stereo34 == tmax_y34:
                                metrics['passed_stereo34'] += 1
                                metrics['frac_stereo34'] += [frac_stereo34]
                                h['TracksPassed'].Fill("Stereo station 3&4", 1)
                                if tmax_stereo34 not in in_stereo34:
                                    h['TracksPassedU'].Fill("Stereo station 3&4", 1)
                                    in_stereo34.append(tmax_stereo34)
                                
                                if tmax_34 == tmax_y34:
                                    metrics['passed_34'] += 1
                                    metrics['frac_34'] += [frac_34]
                                    h['TracksPassed'].Fill("station 3&4", 1)
                                    if tmax_34 not in in_34:
                                        h['TracksPassedU'].Fill("station 3&4", 1)
                                        in_34.append(tmax_34)
                                    
                                    if tmax_12 == tmax_34:
                                        metrics['passed_combined'] += 1
                                        h['TracksPassed'].Fill("Combined stations 1&2/3&4", 1)
                                        metrics['reco_passed'] += 1
                                        is_reconstructed = 1
                                        if tmax_34 not in in_combo:
                                            h['TracksPassedU'].Fill("Combined stations 1&2/3&4", 1)
                                            metrics['reco_passed_no_clones'] += 1
                                            in_combo.append(tmax_34)
                                            is_reconstructed_no_clones = 1
                                        
            # For reconstructed tracks
            if is_reconstructed == 0:
                continue

            metrics['reco_frac_tot'] += [frac_tot]
            
            # Momentum
            Pz = hits['Pz']
            Px = hits['Px']
            Py = hits['Py']

            p, px, py, pz = getPtruthFirst(sTree, tmax_tot)
            pt = math.sqrt(px**2 + py**2)

            Z_true = []
            X_true = []
            Y_true = []
            for ahit in sTree.strawtubesPoint:
                if ahit.GetTrackID() == tmax_tot:
                    az, ax, ay = ahit.GetZ(),ahit.GetX(),ahit.GetY()
                    Z_true.append(az)
                    X_true.append(ax)
                    Y_true.append(ay)

            
            metrics['reco_mc_p'] += [p]
            h['TracksPassed_p'].Fill(p, 1)
            
            # Direction
            Z = hits['Z'][(hits['TrackID'] == tmax_tot) * is_before]
            X = hits['X'][(hits['TrackID'] == tmax_tot) * is_before]
            Y = hits['Y'][(hits['TrackID'] == tmax_tot) * is_before]
            Z = Z - Z[0]
            X = X - X[0]
            Y = Y - Y[0]
            R = numpy.sqrt(X**2 + Y**2 + Z**2)
            Theta = numpy.arccos(Z[1:] / R[1:])
            theta = numpy.mean(Theta)
            
            metrics['reco_mc_theta'] += [theta]
            
            h['n_hits_reco_y12'].Fill(n_hits_y12)
            h['n_hits_reco_stereo12'].Fill(n_hits_stereo12)
            h['n_hits_reco_12'].Fill(n_hits_12)
            h['n_hits_reco_y34'].Fill(n_hits_y34)
            h['n_hits_reco_stereo34'].Fill(n_hits_stereo34)
            h['n_hits_reco_34'].Fill(n_hits_34)
            h['n_hits_reco'].Fill(n_hits_tot)
            
            h['n_hits_y12'].Fill(p, n_hits_y12)
            h['n_hits_stereo12'].Fill(p, n_hits_stereo12)
            h['n_hits_12'].Fill(p, n_hits_12)
            h['n_hits_y34'].Fill(p, n_hits_y34)
            h['n_hits_stereo34'].Fill(p, n_hits_stereo34)
            h['n_hits_34'].Fill(p, n_hits_34)
            h['n_hits_total'].Fill(p, n_hits_tot)
            
            h['frac_y12'].Fill(p, frac_y12)
            h['frac_stereo12'].Fill(p, frac_stereo12)
            h['frac_12'].Fill(p, frac_12)
            h['frac_y34'].Fill(p, frac_y34)
            h['frac_stereo34'].Fill(p, frac_stereo34)
            h['frac_34'].Fill(p, frac_34)
            h['frac_total'].Fill(p, frac_tot)

            h['frac_y12_dist'].Fill(frac_y12)
            h['frac_stereo12_dist'].Fill(frac_stereo12)
            h['frac_12_dist'].Fill(frac_12)
            h['frac_y34_dist'].Fill(frac_y34)
            h['frac_stereo34_dist'].Fill(frac_stereo34)
            h['frac_34_dist'].Fill(frac_34)
            h['frac_total_dist'].Fill(frac_tot)
            
            # Fitted track
            
            thetrack = sTree.FitTracks[i_track]
            
            fitStatus   = thetrack.getFitStatus()
            thetrack.prune("CFL") # http://sourceforge.net/p/genfit/code/HEAD/tree/trunk/core/include/Track.h#l280

            nmeas = fitStatus.getNdf()
            pval = fitStatus.getPVal()
            chi2 = fitStatus.getChi2() / nmeas
            
            metrics['fitted_pval'] += [pval]
            metrics['fitted_chi'] += [chi2]

            h['chi2fittedtracks'].Fill(chi2)
            h['pvalfittedtracks'].Fill(pval)


            try:

                fittedState = thetrack.getFittedState()
                fittedMom = fittedState.getMomMag()
                fittedMom = fittedMom #*int(charge)

                px_fit,py_fit,pz_fit = fittedState.getMom().x(),fittedState.getMom().y(),fittedState.getMom().z()
                p_fit = fittedMom
                pt_fit = math.sqrt(px_fit**2 + py_fit**2)


                metrics['fitted_p'] += [p_fit]
                perr = (p - p_fit) / p
                h['ptrue-p/ptrue'].Fill(perr)
                h['perr'].Fill(p, perr)
                h['perr_direction'].Fill(numpy.rad2deg(theta), perr)

                pterr = (pt - pt_fit) / pt
                h['pttrue-pt/pttrue'].Fill(pterr)

                pxerr = (px - px_fit) / px
                h['pxtrue-px/pxtrue'].Fill(pxerr)

                pyerr = (py - py_fit) / py
                h['pytrue-py/pytrue'].Fill(pyerr)

                pzerr = (pz - pz_fit) / pz
                h['pztrue-pz/pztrue'].Fill(pzerr)

                if math.fabs(p) > 0.0 :
                    h['pvspfitted'].Fill(p, fittedMom)
                fittedtrackDir = fittedState.getDir()
                fittedx=math.degrees(math.acos(fittedtrackDir[0]))
                fittedy=math.degrees(math.acos(fittedtrackDir[1]))
                fittedz=math.degrees(math.acos(fittedtrackDir[2]))
                fittedmass = fittedState.getMass()
                h['momentumfittedtracks'].Fill(fittedMom)
                h['xdirectionfittedtracks'].Fill(fittedx)
                h['ydirectionfittedtracks'].Fill(fittedy)
                h['zdirectionfittedtracks'].Fill(fittedz)
                h['massfittedtracks'].Fill(fittedmass)

                metrics['fitted_x'] += [fittedx]
                metrics['fitted_y'] += [fittedy]
                metrics['fitted_z'] += [fittedz]
                metrics['fitted_mass'] += [fittedmass]


                Z_fit = []
                X_fit = []
                Y_fit = []
                for az in Z_true:
                    rc,pos,mom = extrapolateToPlane(thetrack, az)
                    Z_fit.append(pos.Z())
                    X_fit.append(pos.X())
                    Y_fit.append(pos.Y())

                for i in range(len(Z_true)):
                    xerr = abs(X_fit[i] - X_true[i])
                    yerr = abs(Y_fit[i] - Y_true[i])
                    h['abs(x - x-true)'].Fill(xerr)
                    h['abs(y - y-true)'].Fill(yerr)

                rmse_x = numpy.sqrt(numpy.mean((numpy.array(X_fit) - numpy.array(X_true))**2))
                rmse_y = numpy.sqrt(numpy.mean((numpy.array(Y_fit) - numpy.array(Y_true))**2))
                h['rmse_x'].Fill(rmse_x)
                h['rmse_y'].Fill(rmse_y)



            except:
                print "Problem with fitted state."


        h['Reco_tracks'].Fill("N total", n_tracks)
        h['Reco_tracks'].Fill("N recognized tracks", n_recognized)
        h['Reco_tracks'].Fill("N clones", n_clones)
        h['Reco_tracks'].Fill("N ghosts", n_ghosts)
        h['Reco_tracks'].Fill("N others", n_others)
            
    ############################################# Save hists #########################################################
    
    save_hists(h, output_file)

    return metrics