def fits_corner(self, pC, pOrig, p1, p2 ) :
'''
fits a point onto a corner in a motif.
returns true if
the distances d1 (pC - p1) and d2 (pC - p2) are within 1*delta of c
the angles pC-p2-pOrig and pC-p2-pOrig are within rho degrees of 90
note that the actual p0 being evaluated is p1 or p2, and pOrig is a point
next to p0
'''
if GridPoint(pC) in self.connectivity:
return False
if p1 is None or p2 is None:
return False
c = self.critdist()
distance_cond_1 = within_distance(c, pC, p1, self.delta)
distance_cond_2 = within_distance(c, pC, p2, self.delta)
angle_cond_1 = is_perpend(pC-p1, pOrig-p1, self.rho)
angle_cond_2 = is_perpend(pC-p2, pOrig-p2, self.rho)
return (distance_cond_1 and distance_cond_2 and angle_cond_1 and angle_cond_2)
def fits_corner(self, pC, pOrig, p1, p2):
'''
fits a point onto a corner in a motif.
returns true if
the distances d1 (pC - p1) and d2 (pC - p2) are within 1*delta of c
the angles pC-p2-pOrig and pC-p2-pOrig are within rho degrees of 90
note that the actual p0 being evaluated is p1 or p2, and pOrig is a point
next to p0
'''
if GridPoint(pC) in self.connectivity:
return False
if p1 is None or p2 is None:
return False
c = self.critdist()
distance_cond_1 = within_distance(c, pC, p1, self.delta)
distance_cond_2 = within_distance(c, pC, p2, self.delta)
angle_cond_1 = is_perpend(pC - p1, pOrig - p1, self.rho)
angle_cond_2 = is_perpend(pC - p2, pOrig - p2, self.rho)
return (distance_cond_1 and distance_cond_2 and angle_cond_1
and angle_cond_2)
def fits_line(self, pJ, p0, p1):
'''
compares the angle p1-p0-pJ.
return true if
the distance d (p0-pJ) is c*(1-delta) < d < c*(1+delta) where c is critdist()
the angle p1-p0-pJ is within rho degrees of 180
'''
if GridPoint(pJ) in self.connectivity:
return False
#import pdb
#pdb.set_trace()
c = self.critdist()
distance_cond = within_distance(c, p0, pJ, self.delta)
angle_cond = is_parallel(pJ - p0, p1 - p0, self.rho_loose)
return (distance_cond and angle_cond)
def fits_line(self, pJ, p0, p1):
'''
compares the angle p1-p0-pJ.
return true if
the distance d (p0-pJ) is c*(1-delta) < d < c*(1+delta) where c is critdist()
the angle p1-p0-pJ is within rho degrees of 180
'''
if GridPoint(pJ) in self.connectivity:
return False
#import pdb
#pdb.set_trace()
c = self.critdist()
distance_cond = within_distance(c, p0, pJ, self.delta)
angle_cond = is_parallel(pJ-p0, p1-p0, self.rho_loose)
return (distance_cond and angle_cond)
def fits_parallel(self, pJ, p0, p1, pX, pZ):
'''
fits a point parallel to a corner
returns true if
the distance d (p0-pJ) is within 1*delta of c
the angle pC-p0-p1 is within rho degrees of 90
the line pC-p0 is parallel to pX-pZ within rho_strict degrees
here, p0 is the actual p0 next to pJ unlike in the above method
'''
if GridPoint(pJ) in self.connectivity:
return False
if p1 is None or pX is None or pZ is None:
return False
c = self.critdist()
distance_cond = within_distance(c, pJ, p0, self.delta)
angle_cond = is_perpend(pJ - p0, p1 - p0, self.rho)
parallel_cond = is_parallel(pJ - p0, pZ - pX, self.rho_strict)
return (distance_cond and angle_cond and parallel_cond)
def fits_parallel(self, pJ, p0, p1, pX, pZ):
'''
fits a point parallel to a corner
returns true if
the distance d (p0-pJ) is within 1*delta of c
the angle pC-p0-p1 is within rho degrees of 90
the line pC-p0 is parallel to pX-pZ within rho_strict degrees
here, p0 is the actual p0 next to pJ unlike in the above method
'''
if GridPoint(pJ) in self.connectivity:
return False
if p1 is None or pX is None or pZ is None:
return False
c = self.critdist()
distance_cond = within_distance(c, pJ, p0, self.delta)
angle_cond = is_perpend(pJ-p0, p1-p0, self.rho)
parallel_cond = is_parallel(pJ-p0, pZ-pX, self.rho_strict)
return (distance_cond and angle_cond and parallel_cond)
def fits_cross_motif(self, pJ, p0, p1, p2 ):
'''
compares the angle p1-p0-pJ. p0 is the point being extended and pJ is the point
being considered.
Returns true if the following conditions are true:
the distance d (p0-pJ) is c*(1-delta) < d < c*(1+delta) where c is critdist()
the angle p1-p0-pJ is within rho degrees of 90
the angle p1-p0-pJ is within rho_strict degrees of the angle p1-p0-p2
'''
if GridPoint(pJ) in self.connectivity:
return False
c = self.critdist()
distance_cond = within_distance(c, p0, pJ, self.delta)
angle_cond = is_perpend(pJ-p0, p1-p0, self.rho_loose)
#angle_cond = True
rel_angle_cond = (np.abs( angle(pJ-p0, p1-p0) - angle(p1-p0, p2-p0) ) < self.rho)
#rel_angle_cond = True
return (distance_cond and angle_cond and rel_angle_cond)
def fits_cross_motif(self, pJ, p0, p1, p2):
'''
compares the angle p1-p0-pJ. p0 is the point being extended and pJ is the point
being considered.
Returns true if the following conditions are true:
the distance d (p0-pJ) is c*(1-delta) < d < c*(1+delta) where c is critdist()
the angle p1-p0-pJ is within rho degrees of 90
the angle p1-p0-pJ is within rho_strict degrees of the angle p1-p0-p2
'''
if GridPoint(pJ) in self.connectivity:
return False
c = self.critdist()
distance_cond = within_distance(c, p0, pJ, self.delta)
angle_cond = is_perpend(pJ - p0, p1 - p0, self.rho_loose)
#angle_cond = True
rel_angle_cond = (
np.abs(angle(pJ - p0, p1 - p0) - angle(p1 - p0, p2 - p0)) <
self.rho)
#rel_angle_cond = True
return (distance_cond and angle_cond and rel_angle_cond)