def install(cls, engine_version):
import getnrn
cls.environment_vars, cls.path = NeuronEngine.get_nrn_environment()
inform('Will fetch and install the latest NEURON version', indent=2)
getnrn.install_neuron(get_latest=True)
def install(cls, engine_version):
import getnrn
cls.environment_vars, cls.path = NeuronEngine.get_nrn_environment()
inform('Will fetch and install the latest NEURON version', indent=2)
getnrn.install_neuron()
def install(cls, engine_version):
import getnrn
home = os.environ['HOME']
arch = platform.machine()
pp = os.path.join(home, 'local/lib/python/site-packages')
cls.path = os.path.join(home, 'neuron/nrn/', arch, 'bin')
cls.environment_vars = {'PYTHONPATH': pp,
'NEURON_HOME': os.path.join(home, 'neuron/nrn/', arch)}
inform('Will fetch and install the latest NEURON version', indent=2)
getnrn.install_neuron()
def install(cls, engine_version):
import getnrn
home = os.environ['HOME']
arch = platform.machine()
pp = os.path.join(home, 'local/lib/python/site-packages')
cls.path = os.path.join(home, 'neuron/nrn/', arch, 'bin')
cls.environment_vars = {
'PYTHONPATH': pp,
'NEURON_HOME': os.path.join(home, 'neuron/nrn/', arch)
}
inform('Will fetch and install the latest NEURON version', indent=2)
getnrn.install_neuron()
def __init__(self, target):
try:
FNULL = open(os.devnull, 'w')
sp.check_call(['nrniv', '--version'], stdout=FNULL)
except OSError:
import getnrn
inform('Will fetch and install the latest NEURON version', indent=2)
getnrn.install_neuron()
self.modelpath = realpath(target)
self.extra_pars = []
try:
self.stdout = self.compile_modfiles()
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
def __init__(self, target):
try:
FNULL = open(os.devnull, 'w')
sp.check_call(['nrniv', '--version'], stdout=FNULL)
except OSError:
import getnrn
inform('Will fetch and install the latest NEURON version',
indent=2)
getnrn.install_neuron()
self.modelpath = realpath(target)
self.extra_pars = []
try:
self.stdout = self.compile_modfiles()
except sp.CalledProcessError as err:
self.stderr = err.output
self.returncode = err.returncode
inform('Error compiling modfiles:', self.stderr, indent=2)
