def test_visit_features_node_feature_ignored(self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'ignored_type', 1, 100, '', {'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = None
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs, {})
def test_visit_features_node_feature_included(self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'type_1', 1, 100, '', {'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = 'Feature_string'
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs.keys(), [1])
self.assertIsInstance(converter.contigs[1], EMBLContig)
def test_visit_features_node_feature_ignored(self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'ignored_type', 1, 100, '',
{'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = None
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs, {})
def test_visit_features_node_feature_included(self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'type_1', 1, 100, '',
{'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = 'Feature_string'
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs.keys(), [1])
self.assertIsInstance(converter.contigs[1], EMBLContig)
def test_visit_features_node_two_different_features(self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'type_1', 1, 100, '', {'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = 'Feature_string'
converter.visit_feature_node(feature_node)
feature_node = self.mock_feature_node(2, 'type_2', 101, 200, '', {'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = "Another_feature_string"
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs.keys(), [1, 2])
self.assertIsInstance(converter.contigs[1], EMBLContig)
self.assertIsInstance(converter.contigs[2], EMBLContig)
def test_visit_features_node_two_different_features(
self, embl_feature_mock):
converter = EMBLConverter(None)
feature_node = self.mock_feature_node(1, 'type_1', 1, 100, '',
{'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = 'Feature_string'
converter.visit_feature_node(feature_node)
feature_node = self.mock_feature_node(2, 'type_2', 101, 200, '',
{'attr_k1': 'attr_v1'})
embl_feature_mock.return_value.format.return_value = "Another_feature_string"
converter.visit_feature_node(feature_node)
self.assertEqual(converter.contigs.keys(), [1, 2])
self.assertIsInstance(converter.contigs[1], EMBLContig)
self.assertIsInstance(converter.contigs[2], EMBLContig)