def buildMeshImage(vertices, faces,
encoding=GiftiEncoding.GIFTI_ENCODING_ASCII):
""" build a GiftiImage from arrays of vertices and faces
NOTE : this is doing the same as the gifti.GiftiImage_fromTriangles
function and is only redefined here for demonstration purpose"""
k = GiftiImage_fromarray(vertices)
k.arrays[0].intentString = "NIFTI_INTENT_POINTSET"
k.addDataArray_fromarray(faces, GiftiIntentCode.NIFTI_INTENT_TRIANGLE)
for a in k.arrays:
a.encoding = encoding
return k
def buildMeshImage(vertices,
faces,
encoding=GiftiEncoding.GIFTI_ENCODING_ASCII):
""" build a GiftiImage from arrays of vertices and faces
NOTE : this is doing the same as the gifti.GiftiImage_fromTriangles
function and is only redefined here for demonstration purpose"""
k = GiftiImage_fromarray(vertices)
k.arrays[0].intentString = "NIFTI_INTENT_POINTSET"
k.addDataArray_fromarray(faces, GiftiIntentCode.NIFTI_INTENT_TRIANGLE)
for a in k.arrays:
a.encoding = encoding
return k
def mesh_contour_with_files(input_mesh, input_labels, output_mesh=None,
output_labels=None):
from gifti import loadImage, saveImage, GiftiDataArray, GiftiImage
from gifti import GiftiImage_fromarray, GiftiImage_fromTriangles
from gifti import GiftiIntentCode, GiftiEncoding
labels = loadImage(input_labels).arrays[0].data.astype(int)
cor, triangles = loadImage(input_mesh).arrays
contour_cor, contour_tri = mesh_contour(cor.data, triangles.data.astype(int),
labels)
k = GiftiImage_fromarray(contour_cor)
k.arrays[0].intentString = "NIFTI_INTENT_POINTSET"
k.addDataArray_fromarray(contour_tri, GiftiIntentCode.NIFTI_INTENT_TRIANGLE)
for a in k.arrays:
a.encoding = GiftiEncoding.GIFTI_ENCODING_ASCII
if output_mesh is None:
output_mesh = non_existent_file(add_suffix(input_mesh, '_contour'))
pyhrf.verbose(1, 'saving to %s' %output_mesh)
k.save(output_mesh)