if line.startswith('#') or not line.strip():
pass # skip comment lines & blank lines
else:
spl_line = line.split()
if spl_line[1] == "1": #box enabled
box_nums.append(int(spl_line[0]))
bird_nums.append(int(spl_line[2]))
processes.append(spl_line[4])
inf.close()
subjects = ['B%d' % (bird_num) for bird_num in bird_nums]
data_folder = '/home/bird/opdat'
# load all data
with warnings.catch_warnings():
warnings.simplefilter("ignore")
behav_data = load_data_pandas(subjects, data_folder);
f = open('/home/bird/all.summary', 'w')
f.write("this all.summary generated at %s\n" % (dt.datetime.now().strftime('%x %X')))
f.write("FeedErr(won't come up, won't go down, already up, resp during feed)\n")
# Now loop through each bird and grab the error info from each summaryDAT file
for (box, bird, proc) in zip(box_nums, bird_nums, processes):
try:
if proc in ('shape','lights','pylights', 'lights.py'):
f.write("box %d\tB%d\t %s\n" % (box, bird, proc))
else:
summaryfname = "/home/bird/opdat/B%d/%d.summaryDAT" % (bird, bird)
sdat = open(summaryfname, 'rt')
for line in in_f.readlines():
if line.startswith('#') or not line.strip():
pass # skip comment lines & blank lines
else:
spl_line = line.split()
if spl_line[1] == "1": #box enabled
box_nums.append(int(spl_line[0]))
bird_nums.append(int(spl_line[2]))
processes.append(spl_line[-1])
subjects = ['B%d' % (bird_num) for bird_num in bird_nums]
data_folder = '/home/bird/opdat'
# load all data
with warnings.catch_warnings():
warnings.simplefilter("ignore")
behav_data = load_data_pandas(subjects, data_folder);
with open(DATA_PATH+'all.compassion', 'w') as f:
f.write("this all.compassion ran on %s at %s\n" % (gethostname(), dt.datetime.now().strftime('%x %X')))
# Now loop through each bird and grab the error info from each summaryDAT file
for (box, bird, proc) in zip(box_nums, bird_nums, processes):
try:
if proc in ('Lights',):
pass
else:
configfname = "/home/bird/opdat/B%d/config.json" % (bird)
try:
with open(configfname, 'rb') as config:
parameters = json.load(config)
with open(process_fname, 'rt') as in_f:
for line in in_f.readlines():
if line.startswith('#') or not line.strip():
pass # skip comment lines & blank lines
else:
spl_line = line.split()
if spl_line[1] == "1": #box enabled
box_nums.append(int(spl_line[0]))
bird_nums.append(int(spl_line[2]))
processes.append(spl_line[-1])
subjects = ['B%d' % (bird_num) for bird_num in bird_nums]
# load all data
with warnings.catch_warnings():
warnings.simplefilter("ignore")
behav_data = load_data_pandas(subjects, DATA_PATH);
with open(DATA_PATH+'all.summary','w') as f:
f.write("this all.summary generated at %s\n" % (dt.datetime.now().strftime('%x %X')))
f.write("FeedErr(won't come up, won't go down, already up, resp during feed)\n")
# Now loop through each bird and grab the error info from each summaryDAT file
for (box, bird, proc) in zip(box_nums, bird_nums, processes):
try:
if proc in ('Lights',):
f.write("box %d\tB%d\t %s\n" % (box, bird, proc))
else:
summaryfname = "/home/bird/opdat/B%d/%d.summaryDAT" % (bird, bird)
with open(summaryfname, 'rt') as sdat: