def main():
args = app.parse_args()
out = match_deconvoluted_ions(
args.search_space,
args.deconvoluted_spectra_file,
args.ms1_match_tolerance,
args.ms2_match_tolerance,
4)
out = postprocess_matches(out)
out = classify_data_by_model(out, args.model_file)
out = calculate_false_discovery_rate(out, deconvoluted_spectra=args.deconvoluted_spectra_file, model_file_path=args.model_file)
def test_3_postprocess_matches_step(self):
print("test_3_postprocess_matches_step")
self.postprocessed_ions_file = entry_point.postprocess_matches(
self.db_file_name)
self.assertTrue(os.path.exists(self.postprocessed_ions_file))
print(self.postprocessed_ions_file)
