def simple_model(output_dir):
start_time = "2018-09-20T12:00"
model = gs.Model(start_time=start_time,
duration=gs.days(1),
time_step=gs.minutes(30),
name="test model for tideflats",
)
model.map = MapFromBNA(bna_file)
model.movers += gs.constant_wind_mover(10, 300, "m/s")
model.spills += gs.surface_point_line_spill(num_elements=100,
start_position=(5.4, 53.38, 0),
end_position=(5.8, 53.4, 0),
release_time=start_time,
)
model.outputters += gs.Renderer(output_timestep=gs.hours(1),
map_filename=bna_file,
output_dir=output_dir,
formats=['gif'], # ['gif', 'png']
image_size=(800, 400),
# viewport=((4.5, 53.0),
# (5.5, 53.5)),
)
return model
def simple_model(output_dir):
start_time = "2018-09-20T12:00"
model = gs.Model(
start_time=start_time,
duration=gs.days(1),
time_step=gs.minutes(30),
name="test model for tideflats",
)
model.map = MapFromBNA(bna_file)
model.movers += gs.constant_wind_mover(10, 300, "m/s")
model.spills += gs.surface_point_line_spill(
num_elements=100,
start_position=(5.4, 53.38, 0),
end_position=(5.8, 53.4, 0),
release_time=start_time,
)
model.outputters += gs.Renderer(
output_timestep=gs.hours(1),
map_filename=bna_file,
output_dir=output_dir,
formats=['gif'], # ['gif', 'png']
image_size=(800, 400),
# viewport=((4.5, 53.0),
# (5.5, 53.5)),
)
return model
def main(RootDir, Data_Dir, StartSite, RunSite, NumStarts, RunStarts,
ReleaseLength, TrajectoryRunLength, StartTimeFiles, TrajectoriesPath,
NumLEs, MapFileName, refloat, current_files, wind_files,
diffusion_coef, model_timestep, windage_range, windage_persist,
OutputTimestep):
timingRecord = open(os.path.join(RootDir, "timing.txt"), "w")
count = len(StartTimeFiles) * len(RunStarts)
timingRecord.write("This file tracks the time to process " + str(count) +
" gnome runs")
# model timing
release_duration = timedelta(hours=ReleaseLength)
run_time = timedelta(hours=TrajectoryRunLength)
# initiate model
model = Model(duration=run_time, time_step=model_timestep, uncertain=False)
# determine boundary for model
print "Adding the map:", MapFileName
mapfile = get_datafile(os.path.join(Data_Dir, MapFileName))
# model.map = MapFromBNA(mapfile, refloat_halflife=refloat) no, model map needs to inclde mudflats. later
# loop through seasons
for Season in StartTimeFiles:
timer1 = datetime.now()
SeasonName = Season[1]
start_times = open(Season[0], 'r').readlines()[:NumStarts]
SeasonTrajDir = os.path.join(RootDir, TrajectoriesPath, SeasonName)
if not os.path.isdir(SeasonTrajDir):
print "Creating directory: ", SeasonTrajDir
make_dir(SeasonTrajDir)
print " Season:", SeasonName
# get and parse start times in this season
start_dt = []
for start_time in start_times:
start_time = [int(i) for i in start_time.split(',')]
start_time = datetime(start_time[0], start_time[1], start_time[2],
start_time[3], start_time[4])
start_dt.append(start_time)
## loop through start times
for time_idx in RunStarts:
timer2 = datetime.now()
gc.collect()
model.movers.clear()
## set the start location
start_time = start_dt[time_idx]
end_time = start_time + run_time
model.start_time = start_time
print " ", start_time, "to", end_time
## get a list of the only data files needed for the start time (less data used)
## note: requires data files in year increments
#Todo: needs fixing before real run
years = range(start_time.year, end_time.year + 1)
years = [str(i) for i in years]
wind = [s for s in wind_files if any(xs in s for xs in years)]
current = [
s for s in current_files if any(xs in s for xs in years)
]
#Todo: add mudflats. Does it work like this?
topology = {'node_lon': 'x', 'node_lat': 'y'}
## add wind movers
w_mover = PyWindMover(filename=wind)
model.movers += w_mover
## add current movers
current_mover = gs.GridCurrent.from_netCDF(current,
grid_topology=topology)
c_mover = PyCurrentMover(current=current_mover)
model.movers += c_mover
tideflat = Matroos_Mudflats(current, grid_topology=topology)
land_map = gs.MapFromBNA(mapfile)
model.map = TideflatMap(land_map, tideflat)
## add diffusion
model.movers += RandomMover(diffusion_coef=diffusion_coef)
## loop through start locations
timer3 = datetime.now()
#Todo: can it deal with the test.location.txt file??
start_position = [float(i) for i in StartSite.split(',')]
OutDir = os.path.join(RootDir, TrajectoriesPath, SeasonName,
'pos_%03i' % (RunSite + 1))
make_dir(OutDir)
print " ", RunSite, time_idx
print " Running: start time:", start_time,
print "at start location:", start_position
## set the spill to the location
spill = surface_point_line_spill(
num_elements=NumLEs,
start_position=(start_position[0], start_position[1], 0.0),
release_time=start_time,
end_release_time=start_time + release_duration,
windage_range=windage_range,
windage_persist=windage_persist)
# print "adding netcdf output"
netcdf_output_file = os.path.join(
OutDir,
'pos_%03i-t%03i_%08i.nc' %
(RunSite + 1, time_idx, int(start_time.strftime('%y%m%d%H'))),
)
model.outputters.clear()
model.outputters += NetCDFOutput(
netcdf_output_file,
output_timestep=timedelta(hours=OutputTimestep))
model.spills.clear()
model.spills += spill
model.full_run(rewind=True)
timer4 = datetime.now()
diff = round((timer4 - timer3).total_seconds() / 60, 2)
timingRecord.write("\t\t" + str(RunSite) + " took " + str(diff) +
" minutes to complete")
diff = round((timer4 - timer1).total_seconds() / 3600, 2)
count = len(RunStarts)
timingRecord.write("\t" + str(SeasonName) + " took " + str(diff) +
" hours to finish " + str(count) + " Gnome runs")
#OutDir.close
timingRecord.close
print 'Adding current'
model.movers += current_mover
print 'Adding RandomMover'
model.movers += gs.RandomMover(diffusion_coeff=50000)
print 'adding a wind mover:'
model.movers += gs.constant_wind_mover(**Wind)
print 'adding spill'
spill = gs.surface_point_line_spill(num_elements=100,
start_position=SpillPosition,
end_position=(SpillPosition[0],
SpillPosition[1] - 0.1, 0),
release_time=asdatetime(start_time),
amount=5000,
units='kg',
name='My spill')
model.spills += spill
model.outputters += gs.NetCDFOutput(os.path.join(out_dir, 'test_output.nc'),
which_data='most',
output_timestep=dT_OUT)
renderer = gs.Renderer(
output_timestep=dT_OUT,
map_filename=mapfile,
output_dir=out_dir,
formats=['gif'], # ['gif', 'png']
image_size=(1280, 1024),
# end_position=( start_position[0]+0.4, start_position[1]+0.2, 0.0 ),
# release_time=start_time,
# end_release_time=start_time+release_duration
# )
# spill = point_line_release_spill(num_elements=setup.NumLEs,
# start_position=( start_position[0], start_position[1], 0.0 ),
# release_time=start_time,
# end_release_time=start_time+release_duration,
# windage_range=(setup.Windage),
# windage_persist=setup.WindagePersist
# )
spill = surface_point_line_spill(
num_elements=setup.NumLEs,
start_position=(start_position[0], start_position[1], 0.0),
release_time=start_time,
end_release_time=start_time + release_duration,
windage_range=(setup.Windage),
windage_persist=setup.WindagePersist)
# set up the renderer location
image_dir = os.path.join(
setup.RootDir, 'Images', SeasonName,
'images_pos_%03i-time_%03i' % (pos_idx + 1, time_idx))
renderer = Renderer(
os.path.join(setup.RootDir, setup.MapFileName),
image_dir,
image_size=(800, 600),
output_timestep=timedelta(hours=setup.out_delta))
renderer.graticule.set_DMS(True)
#renderer.viewport = ((-120.6666, 33.75),(-119.25, 34.5))
