def test_sigmoid():
x = np.array([1, 1.1, 1.2, 5.5])
v = Variable(x)
sig = Sigmoid(v)
np.testing.assert_allclose(sig.forward(), [0.73105858, 0.75026011, 0.76852478, 0.99592986], rtol=1e-5)
sig.backward(np.ones(4))
np.testing.assert_allclose(v.get_gradient(), [0.19661193, 0.18736987, 0.17789444, 0.00405357], rtol=1e-5)
def test_reduce_mean_splitter_broadcasting(self):
x = np.arange(6).reshape(3, 2)
w = np.arange(6, 8).reshape(2, 1)
b = 12.0
y = np.arange(8, 11).reshape(3, 1)
dl_mse = 11.0
x_variable = Variable(x)
w_variable = Variable(w)
b_variable = Variable(b)
y_variable = Variable(y)
xw_node = Multiply(x_variable, w_variable)
xwb_node = Add(xw_node, b_variable)
xwb_mse_node = MSEWithSplitter(y_variable, xwb_node)
xwb_mse_desired = mean_squared_error(y, (x @ w) + np.full((3, 1), b))
xwb_mean_actual = xwb_mse_node.forward()
np.testing.assert_allclose(xwb_mean_actual, xwb_mse_desired)
xwb_mse_node.backward(dl_mse)
dl_db_actual = b_variable.get_gradient()
dl_db_desired = dl_mse * 2.0 * np.sum((x @ w) + np.full((3, 1), b) - y) / x.shape[0]
np.testing.assert_allclose(dl_db_actual, dl_db_desired)
dl_dx = x_variable.get_gradient()
dl_dw = w_variable.get_gradient()
def _build_architecture_get_prediction_and_regularization_cost(
architecture, weight_decay, current_input):
architecture_built = list()
regularization_cost = Variable(0.0)
weight_decay_variable = Variable(weight_decay) # TODO: constant
previous_layer_output = architecture[0]['input']
for layer_dictionary in architecture:
assert previous_layer_output == layer_dictionary["input"], \
'Inconsistent architecture: can not feed {} outputs to {} inputs'.format(
previous_layer_output,
layer_dictionary['input']
)
activation_function = activation_function_name_to_class[
layer_dictionary["nonlinear"]]
regularization_method = regularization_method_name_to_class[
layer_dictionary["regularization"]]
layer = FullyConnectedLayer(layer_dictionary["input"],
layer_dictionary["output"],
activation_function, current_input)
regularization_cost = Add(
regularization_cost,
Multiply(weight_decay_variable,
regularization_method(layer.get_weight())))
architecture_built.append(layer)
current_input = layer
previous_layer_output = layer_dictionary['output']
return architecture_built, current_input, regularization_cost
def test_l2(self):
x = np.random.rand(50, 30) - 0.5
v = Variable(x)
l2 = L2(v)
np.testing.assert_allclose(l2.forward(), np.sum(np.abs(x) ** 2), rtol=1e-5)
l2.backward(1)
np.testing.assert_allclose(v.get_gradient(), 2 * x, rtol=1e-5)
def test_identity():
x = np.random.rand(10)
v = Variable(x)
none = Identity(v)
np.testing.assert_allclose(none.forward(), x, rtol=1e-5)
none.backward(x)
np.testing.assert_equal(v.get_gradient(), x)
def test_l1(self):
x = np.random.rand(50, 30) - 0.5
v = Variable(x)
l1 = L1(v)
np.testing.assert_allclose(l1.forward(), np.sum(np.abs(x)), rtol=1e-5)
l1.backward(1)
np.testing.assert_equal(v.get_gradient(), np.sign(x))
def test_forward(self):
y_true = np.array([[0.0, 1.0],
[1.0, 0.0],
[0.0, 1.0]])
y_predicted = np.arange(1, 7).reshape(3, 2)
y_predicted = y_predicted / np.tile(np.sum(y_predicted, axis=1).reshape(3, 1), (1,2))
y_true_variable = Variable(y_true)
y_predicted_variable = Variable(y_predicted)
ce_node = CrossEntropy(y_true_variable, y_predicted_variable)
ce_actual = ce_node.forward()
ce_desired = log_loss(y_true, y_predicted)
self.assertAlmostEqual(ce_actual, ce_desired)
dl_dce = 2.0
ce_node.backward(dl_dce)
dl_dyp_actual = y_predicted_variable.get_gradient()
dl_dyp_desired = -dl_dce * (y_true / y_predicted) / y_true.shape[0]
np.testing.assert_allclose(dl_dyp_actual, dl_dyp_desired)
def test_forward_backward_1_no_activation(self):
x = np.arange(6).reshape(3, 2)
x_variable = Variable(x)
fc = FullyConnectedLayer(2, 1, Identity, x_variable)
w = fc._w._value.copy()
b = fc._b._value.copy()
wxb_desired = x @ w + b
wxb_actual = fc.forward()
np.testing.assert_almost_equal(wxb_actual, wxb_desired)
fc.backward(np.array([[6.0], [7.0], [8.0]]))
dl_dw_actual = fc._w.get_gradient()
dl_dx_actual = x_variable.get_gradient()
dl_dw_desired = np.array([[0 * 6 + 2 * 7 + 4 * 8], [1 * 6 + 3 * 7 + 5 * 8]])
dl_dx_desired = np.array([[w[0,0] * 6, w[1,0] * 6], [w[0,0] * 7, w[1,0] * 7], [w[0,0] * 8, w[1,0] * 8]])
np.testing.assert_allclose(dl_dw_actual, dl_dw_desired)
np.testing.assert_allclose(dl_dx_actual, dl_dx_desired)
dl_db_actual = fc._b.get_gradient()
dl_db_desired = np.array([6 + 7 + 8])
np.testing.assert_allclose(dl_db_actual, dl_db_desired)
def test_transpose(self):
x = np.random.rand(5, 3)
v = Variable(x)
t = Transpose(v)
np.testing.assert_allclose(t.forward(), x.T)
grads = np.random.rand(3, 5)
t.backward(grads)
np.testing.assert_allclose(v.get_gradient(), grads.T)
def test_reduce_mean_merged(self):
# Array
y = np.array([-0.5, 1, 2.5])
v2 = Variable(y)
m = ReduceMean(v2, 0)
np.testing.assert_allclose(m.forward(), 1.0, rtol=1e-5)
m.backward(1.0)
np.testing.assert_equal(v2.get_gradient(), [1 / 3, 1 / 3, 1 / 3])
def test_splitter_forward(self):
y_true = np.array([[1], [2], [3], [4]])
y_predicted = np.array([[8], [7], [6], [5]])
mse_desired = mean_squared_error(y_true, y_predicted)
y_true_variable = Variable(y_true)
y_predicted_variable = Variable(y_predicted)
mse_node = MSEWithSplitter(y_true_variable, y_predicted_variable)
mse_actual = mse_node.forward()
np.testing.assert_allclose(mse_actual, mse_desired)
def test_forward_backward(self):
np.random.seed(42)
y = np.random.rand(3, 2)
y_variable = Variable(y)
softmax_node = Softmax(y_variable)
y_softmax_actual = softmax_node.forward()
ey = np.exp(y)
y_softmax_desired = (ey.T / np.sum(ey, axis=1)).T
np.testing.assert_allclose(y_softmax_actual, y_softmax_desired)
dl_dsoftmax = np.random.rand(3,2)
# ---------------
# | 6*e^0| 7*e^1|
# ---------------
# | 8*e^2| 9*e^3|
# ---------------
# |10*e^4|11*e^5|
# ---------------
weighted_ey = dl_dsoftmax * ey
# ----------
# | e^0+e^1|
# ----------
# | e^2+e^3|
# ----------
# | e^4+e^5|
# ----------
ey_row_sum = ey.sum(axis=1)
# ----------------
# | 6*e^0+ 7*e^1|
# ----------------
# | 8*e^2+ 8*e^3|
# ----------------
# | 10*e^4+11*e^5|
# ----------------
weighted_ey_row_sum = weighted_ey.sum(axis=1)
# --------------
# | (e^0+e^1)^2|
# --------------
# | (e^2+e^3)^2|
# --------------
# | (e^4+e^5)^2|
# --------------
squared_ey_row_sum = np.square(ey_row_sum)
dl_dy_desired = np.array([
[(weighted_ey[0,0] * ey_row_sum[0] - ey[0,0] * weighted_ey_row_sum[0]) / squared_ey_row_sum[0], (weighted_ey[0,1] * ey_row_sum[0] - ey[0,1] * weighted_ey_row_sum[0]) / squared_ey_row_sum[0]],
[(weighted_ey[1,0] * ey_row_sum[1] - ey[1,0] * weighted_ey_row_sum[1]) / squared_ey_row_sum[1], (weighted_ey[1,1] * ey_row_sum[1] - ey[1,1] * weighted_ey_row_sum[1]) / squared_ey_row_sum[1]],
[(weighted_ey[2,0] * ey_row_sum[2] - ey[2,0] * weighted_ey_row_sum[2]) / squared_ey_row_sum[2], (weighted_ey[2,1] * ey_row_sum[2] - ey[2,1] * weighted_ey_row_sum[2]) / squared_ey_row_sum[2]],
])
softmax_node.backward(dl_dsoftmax)
dl_dy_actual = y_variable.get_gradient()
np.testing.assert_allclose(dl_dy_actual, dl_dy_desired)
def test_splitter_backward(self):
y_true = np.array([[1], [2], [3], [4]])
y_predicted = np.array([[8], [7], [6], [5]])
mse_derivative_desired = 2.0 / y_true.shape[0] * (y_true - y_predicted)
y_true_variable = Variable(y_true)
y_predicted_variable = Variable(y_predicted)
mse_node = MSEWithSplitter(y_true_variable, y_predicted_variable)
mse_node.forward()
mse_node.backward()
np.testing.assert_allclose(y_true_variable.get_gradient(), mse_derivative_desired)
def test_relu():
x = np.random.random(10) - 0.5
x[1] = -2 # in case all positive
v = Variable(x)
relu = ReLU(v)
expected = np.array(x)
expected[x < 0] = 0
np.testing.assert_allclose(relu.forward(), expected, rtol=1e-5)
relu.backward(np.ones(10))
np.testing.assert_equal(v.get_gradient(), np.sign(expected))
def test_reduce_size(self):
x = np.random.rand(5, 3)
v = Variable(x)
rs_full = ReduceSize(v)
rs_rows = ReduceSize(v, 0)
rs_cols = ReduceSize(v, 1)
np.testing.assert_equal(rs_full.forward(), 15)
np.testing.assert_equal(rs_rows.forward(), 5)
np.testing.assert_equal(rs_cols.forward(), 3)
grad_before = v.get_gradient()
rs_full.backward(np.random.rand(5, 3))
np.testing.assert_equal(v.get_gradient(), grad_before)
def test_reduce_sum(self):
x = np.random.rand(5, 3)
v1, v2 = Variable(x), Variable(x)
rs_rows = ReduceSum(v1, 0)
rs_cols = ReduceSum(v2, 1)
np.testing.assert_allclose(rs_rows.forward(), np.sum(x, 0))
np.testing.assert_allclose(rs_cols.forward(), np.sum(x, 1))
grad_rows = np.random.rand(3,)
rs_rows.backward(grad_rows)
np.testing.assert_allclose(v1.get_gradient(), grad_rows * np.ones((5, 3)))
grad_cols = np.random.rand(5,)
rs_cols.backward(grad_cols)
np.testing.assert_allclose(v2.get_gradient(), (grad_cols * np.ones((5, 3)).T).T)
def __init__(self,
inputs_num: int,
outputs_num: int,
activation_function: ActivationFunction.__class__,
input_variable=None):
super().__init__()
self._af = activation_function
self._w = Variable(
np.random.uniform(-1 / math.sqrt(inputs_num),
1 / math.sqrt(inputs_num),
(inputs_num, outputs_num)))
self._b = Variable(np.zeros(outputs_num))
self._input = input_variable
self._output = self._af(Add(Multiply(self._input, self._w), self._b))
def __init__(self, architecture: list, loss, weight_decay=0.0):
weight_decay = np.float64(weight_decay)
self._x_variable = Variable(None) # TODO: call it placeholder
self._y_variable = Variable(None)
self._architecture, self._prediction_variable, regularization_cost = \
mydnn._build_architecture_get_prediction_and_regularization_cost(
architecture,
weight_decay,
self._x_variable
)
loss_class = loss_name_to_class[loss]
self._is_classification = loss_class == CrossEntropy
self._loss_variable = Add(
loss_class(self._y_variable, self._prediction_variable),
regularization_cost)
def __init__(self, label: GraphNode, predicted: GraphNode):
super().__init__(label, predicted)
diff = Add(predicted, HadamardMult(Variable(-1.0), label))
splitter = Splitter(diff, 2)
square = HadamardMult(splitter, splitter)
mse = ReduceMean(square, 0)
self._node = mse
def test_reduce_sum_merged(self):
# Matrix
x = np.array([[1, 2, 3], [11, 12, 13]])
v = Variable(x)
rs = ReduceSum(v, 1)
np.testing.assert_allclose(rs.forward(), np.array([6, 36]), rtol=1e-5)
rs2 = ReduceSum(v, 0)
np.testing.assert_allclose(rs2.forward(), np.array([12, 14, 16]), rtol=1e-5)
op_sum = ReduceSum(ReduceSum(v, 0), 0)
np.testing.assert_allclose(op_sum.forward(), np.sum(x), rtol=1e-5)
# Array
y = np.array([-0.5, 1, 2.5])
v2 = Variable(y)
r = ReduceSum(v2, 0)
np.testing.assert_allclose(r.forward(), 3.0, rtol=1e-5)
r.backward(1)
np.testing.assert_equal(v2.get_gradient(), [1, 1, 1])
def test_reduce_mean_forward_backward(self):
x = np.array([[1.0], [2.0], [3.0], [4.0]])
x_variable = Variable(x)
reduce_mean_x_node = ReduceMean(x_variable, axis=0)
reduce_mean_x_actual = reduce_mean_x_node.forward()
reduce_mean_x_desired = x.mean()
np.testing.assert_allclose(reduce_mean_x_actual, reduce_mean_x_desired)
reduce_mean_x_node.backward(grad=np.array([5.0]))
dl_dx_actual = x_variable.get_gradient()
dl_dx_desired = np.full(x.shape, 5.0 / x.shape[0])
np.testing.assert_allclose(dl_dx_actual, dl_dx_desired)
def test_square(self):
x = np.array([[1], [2], [3]])
x_variable = Variable(x)
x2_node = HadamardMult(x_variable, x_variable)
x2_actual = x2_node.forward()
x2_desired = x * x
np.testing.assert_almost_equal(x2_actual, x2_desired)
dl_dx2 = np.array([[4], [5], [6]])
x2_node.backward(dl_dx2)
dl_dx_desired = 2.0 * dl_dx2 * x
dl_dx_actual = x_variable.get_gradient()
np.testing.assert_almost_equal(dl_dx_desired, dl_dx_actual)
def test_forward_backward(self):
y = np.arange(1, 7).reshape(3, 2)
y_variable = Variable(y)
log_node = Log(y_variable)
y_log_actual = log_node.forward()
y_log_desired = np.log(y)
np.testing.assert_allclose(y_log_actual, y_log_desired)
dl_dlogy = np.arange(7, 13).reshape(3, 2)
log_node.backward(dl_dlogy)
dl_dy_actual = y_variable.get_gradient()
dl_dy_desired = dl_dlogy / y
np.testing.assert_allclose(dl_dy_actual, dl_dy_desired)
def test_forward(self):
w = np.array([[1, 2, 3, 4],
[5, 6, 7, 8],
[9, 10, 11, 12]])
x = np.array([[13, 14, ],
[15, 16, ],
[17, 18, ],
[19, 20, ]])
wx_desired = np.array([[170, 180],
[426, 452],
[682, 724]])
w_variable = Variable(w)
x_variable = Variable(x)
wx_variable = Multiply(w_variable, x_variable)
wx_actual = wx_variable.forward()
np.testing.assert_allclose(wx_actual, wx_desired)
def test_backward_1(self):
w = np.array([[1, 2], [3, 4], [5, 6], [7, 8]])
x = np.array([[9, 10, 11], [12, 13, 14]])
dl_dwx = np.ones((w.shape[0], x.shape[1]))
w_variable = Variable(w)
x_variable = Variable(x)
wx_variable = Multiply(w_variable, x_variable)
wx_desired = w @ x
wx_actual = wx_variable.forward()
np.testing.assert_allclose(wx_actual, wx_desired)
wx_variable.backward(grad=dl_dwx)
dl_dx_actual = x_variable.get_gradient()
dl_dx_desired = np.array([[16, 16, 16], [20, 20, 20]])
self.assertEqual(dl_dx_desired.shape, dl_dx_actual.shape)
np.testing.assert_allclose(dl_dx_actual, dl_dx_desired)
def test_forward_backward(self):
left = np.array([[1], [2], [3], [4]])
right = np.array([[5], [6], [7], [8]])
left_variable = Variable(left)
right_variable = Variable(right)
left_right_node = HadamardMult(left_variable, right_variable)
left_right_actual = left_right_node.forward()
left_right_expected = left * right
np.testing.assert_allclose(left_right_actual, left_right_expected)
dl_d_left_right = np.array([[9], [10], [11], [12]])
left_right_node.backward(dl_d_left_right)
d_l_d_left_actual = left_variable.get_gradient()
d_l_d_right_actual = right_variable.get_gradient()
d_l_d_left_desired = dl_d_left_right * right
d_l_d_right_desired = dl_d_left_right * left
np.testing.assert_allclose(d_l_d_left_actual, d_l_d_left_desired)
np.testing.assert_allclose(d_l_d_right_actual, d_l_d_right_desired)
def test_vector(self):
left = np.full((4, 1), -1)
right = np.array([[1], [2], [3], [4]])
left_variable = Variable(left)
right_variable = Variable(right)
left_right_node = HadamardMult(left_variable, right_variable)
left_right_actual = left_right_node.forward()
left_right_desired = np.array([[-1], [-2], [-3], [-4]])
np.testing.assert_allclose(left_right_actual, left_right_desired)
dl_d_left_right = np.array([[5], [6], [7], [8]])
left_right_node.backward(dl_d_left_right)
dl_dleft_actual = left_variable.get_gradient()
dl_dright_actual = right_variable.get_gradient()
dl_dleft_desired = np.array([[1 * 5], [2 * 6], [3 * 7], [4 * 8]])
dl_dright_desired = np.array([[-5], [-6], [-7], [-8]])
np.testing.assert_allclose(dl_dleft_actual, dl_dleft_desired)
np.testing.assert_allclose(dl_dright_actual, dl_dright_desired)
class FullyConnectedLayer(GraphNode):
def __init__(self,
inputs_num: int,
outputs_num: int,
activation_function: ActivationFunction.__class__,
input_variable=None):
super().__init__()
self._af = activation_function
self._w = Variable(
np.random.uniform(-1 / math.sqrt(inputs_num),
1 / math.sqrt(inputs_num),
(inputs_num, outputs_num)))
self._b = Variable(np.zeros(outputs_num))
self._input = input_variable
self._output = self._af(Add(Multiply(self._input, self._w), self._b))
def forward(self):
return self._output.forward()
def backward(self, grads=None):
self._output.backward(grads)
def reset(self):
self._output.reset()
def get_value(self):
return self._output.get_value()
def update_grad(self, learning_rate):
# param_scale = np.linalg.norm(self._w.get_value())
# update_scale = np.linalg.norm(-learning_rate * self._w.get_gradient())
# logger.info('Update magnitude is %f (desired is about %f)', update_scale / param_scale, 1e-3)
self._w.update_grad(learning_rate)
self._b.update_grad(learning_rate)
def get_weight(self):
return self._w
def test_backward_2(self):
w = np.array([[1, 2], [3, 4], [5, 6], [7, 8]])
x = np.array([[9, 10, 11], [12, 13, 14]])
dl_dwx = np.arange(1, 1 + w.shape[0] * x.shape[1]).reshape(w.shape[0], x.shape[1])
w_variable = Variable(w)
x_variable = Variable(x)
wx_variable = Multiply(w_variable, x_variable)
wx_desired = w @ x
wx_actual = wx_variable.forward()
np.testing.assert_allclose(wx_actual, wx_desired)
wx_variable.backward(grad=dl_dwx)
dl_dw_actual = w_variable.get_gradient()
dl_dw_desired = np.array([[1 * 9 + 2 * 10 + 3 * 11, 1 * 12 + 2 * 13 + 3 * 14],
[4 * 9 + 5 * 10 + 6 * 11, 4 * 12 + 5 * 13 + 6 * 14],
[7 * 9 + 8 * 10 + 9 * 11, 7 * 12 + 8 * 13 + 9 * 14],
[10 * 9 + 11 * 10 + 12 * 11, 10 * 12 + 11 * 13 + 12 * 14]])
self.assertEqual(dl_dw_desired.shape, dl_dw_actual.shape)
np.testing.assert_allclose(dl_dw_actual, dl_dw_desired)
def test_forward(self):
x = np.array([[1, 2], [3, 4], [5, 6]])
b = np.array([[7, 8], [9, 10], [11, 12]])
dl_dxb = np.array([[13, 14], [15, 16], [17, 18]])
x_variable = Variable(x)
b_variable = Variable(b)
wx_variable = Add(x_variable, b_variable)
wx_variable.forward()
wx_variable.backward(dl_dxb)
dl_dx_actual = x_variable.get_gradient()
dl_db_actual = b_variable.get_gradient()
np.testing.assert_allclose(dl_dx_actual, dl_dxb)
np.testing.assert_allclose(dl_db_actual, dl_dxb)
