def _handlePointsAndPartitions(self):
if self.trackFormat.isDense() and not self.trackFormat.reprIsDense():
self._startList = self._endList[:-1]
self._endList = self._endList[1:]
if self._valList != None:
self._valList = self._valList[1:]
if self._strandList != None:
self._strandList = self._strandList[1:]
if self._idList != None:
self._idList = self._idList[1:]
if self._edgesList != None:
self._edgesList = self._edgesList[1:]
if self._weightsList != None:
self._weightsList = self._weightsList[1:]
for key, extraList in self._extraLists.items():
if extraList != None:
self._extraLists[key] = extraList[1:]
if not self.trackFormat.isDense() and not self.trackFormat.isInterval():
self._endList = VirtualPointEnd(self._startList)
class TestVirtualPointEnd(unittest.TestCase):
def setUp(self):
self._array = array(range(100))
self._vpe = VirtualPointEnd(self._array)
def testIndexing(self):
AssertList([x+1 for x in self._array], self._vpe, self.assertEqual)
def _assertSlicing(self, i, j):
AssertList([x+1 for x in self._array[i:j] ], self._vpe[i:j], self.assertEqual)
def testSlicing(self):
self._assertSlicing(10, 20)
self._assertSlicing(10, 10)
self._assertSlicing(0, 90)
self._assertSlicing(10, 100)
self._assertSlicing(0, 100)
def testNumpyMethods(self):
self.assertEqual(5050, self._vpe.sum())
def setUp(self):
self._array = array(range(100))
self._vpe = VirtualPointEnd(self._array)