def test_merging_fasta_files(self):
raxml_seq_recon = RAxMLSequenceReconstruction('', '', '', '', '', False)
raxml_seq_recon.combine_fastas('gubbins/tests/data/raxml_sequence_reconstruction/1.fasta','gubbins/tests/data/raxml_sequence_reconstruction/2.fasta','combined.fasta')
self.assertTrue(filecmp.cmp('combined.fasta','gubbins/tests/data/raxml_sequence_reconstruction/expected_combined_1_2.fasta', shallow = False))
