def test_are_all_sequence_names_unique(self): validate_fasta = ValidateFastaAlignment('gubbins/tests/data/all_unique_sequence_names.fa') self.assertTrue(validate_fasta.are_sequence_names_unique()) self.assertTrue(validate_fasta.is_input_fasta_file_valid()) validate_fasta = ValidateFastaAlignment('gubbins/tests/data/non_unique_sequence_names.fa') self.assertFalse(validate_fasta.are_sequence_names_unique()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_are_all_sequence_names_unique(self): validate_fasta = ValidateFastaAlignment( 'gubbins/tests/data/all_unique_sequence_names.fa') self.assertTrue(validate_fasta.are_sequence_names_unique()) self.assertTrue(validate_fasta.is_input_fasta_file_valid()) validate_fasta = ValidateFastaAlignment( 'gubbins/tests/data/non_unique_sequence_names.fa') self.assertFalse(validate_fasta.are_sequence_names_unique()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())
def test_are_all_sequence_names_unique(self): validate_fasta = ValidateFastaAlignment( os.path.join(data_dir, 'all_unique_sequence_names.fa')) self.assertTrue(validate_fasta.are_sequence_names_unique()) self.assertTrue(validate_fasta.is_input_fasta_file_valid()) validate_fasta = ValidateFastaAlignment( os.path.join(data_dir, 'non_unique_sequence_names.fa')) self.assertFalse(validate_fasta.are_sequence_names_unique()) self.assertFalse(validate_fasta.is_input_fasta_file_valid())