def __init__(self, parent=None, rangeSelectionCallback=None):
PlotterBase.__init__(self, "RT", "I")
self.rangeSelectionCallback = rangeSelectionCallback
widget = self.widget
widget.plot.__class__ = RtPlot
self.pm = PlotManager(widget)
self.pm.add_plot(widget.plot)
t = self.pm.add_tool(RtSelectionTool)
t.activate()
self.pm.set_default_tool(t)
marker = Marker(label_cb=self.widget.plot.label_info,
constraint_cb=self.widget.plot.on_plot)
marker.rts = [0]
setupStyleRtMarker(marker)
marker.attach(self.widget.plot)
self.marker = marker
self.cursor_info = RtCursorInfo(marker)
label = make.info_label("T", [self.cursor_info], title=None)
label.labelparam.label = ""
label.labelparam.font.size = 12
label.labelparam.border.color = "#ffffff"
label.labelparam.update_label(label)
self.label = label
self.minRTRangeSelected = None
self.maxRTRangeSelected = None
def __init__(self, rangeSelectionCallback=None):
super(RtPlotter, self).__init__("RT", "I")
self.rangeSelectionCallback = rangeSelectionCallback
widget = self.widget
widget.plot.__class__ = RtPlot
# todo: refactor as helper
a = QwtScaleDraw()
# render tic labels in modfied format:
label = lambda self, v: QwtText(formatSeconds(v))
a.label = new.instancemethod(label, widget.plot, QwtScaleDraw)
widget.plot.setAxisScaleDraw(widget.plot.xBottom, a)
self.pm = PlotManager(widget)
self.pm.add_plot(widget.plot)
t = self.pm.add_tool(RtSelectionTool)
self.addTool(RtSelectionTool)
self.pm.set_default_tool(t)
marker = Marker(label_cb=self.widget.plot.label_info,
constraint_cb=self.widget.plot.on_plot)
marker.rts = [0]
setupStyleRtMarker(marker)
marker.attach(self.widget.plot)
self.marker = marker
label = make.info_label("T", [RtCursorInfo(marker)], title=None)
label.labelparam.label = ""
self.label = label
self.minRTRangeSelected = None
self.maxRTRangeSelected = None
def _add_range_selector(self, rtvalues):
self.rtvalues = rtvalues
self.minRTRangeSelected = 0
self.maxRTRangeSelected = 0
range_ = SnappingRangeSelection(self.minRTRangeSelected,
self.maxRTRangeSelected, self.rtvalues)
setupStyleRangeMarker(range_)
self.range_ = range_
# you have to register item to plot before you can register the
# rtSelectionHandler:
self.widget.plot.add_item(range_)
range_.SIG_RANGE_CHANGED.connect(self._range_selection_handler)
#self.widget.disconnect(range_.plot(), SIG_RANGE_CHANGED,
#self._range_selection_handler)
#self.widget.connect(range_.plot(), SIG_RANGE_CHANGED,
#self._range_selection_handler)
cc = make.info_label("TR", [RtRangeSelectionInfo(range_)], title=None)
cc.labelparam.label = ""
cc.labelparam.font.size = 12
cc.labelparam.update_label(cc)
self.widget.plot.add_item(cc)
def create_peakmap_labels(self):
plot = self.widget.plot
rect_marker = RectangleShape()
rect_label = make.info_label("TR", [PeakmapCursorRangeInfo(rect_marker)], title=None)
rect_label.labelparam.label = ""
rect_label.setVisible(1)
plot.rect_label = rect_label
plot.add_item(rect_label)
params = {
"shape/drag/symbol/size": 0,
"shape/drag/line/color": "#cccccc",
"shape/drag/line/width": 1.5,
"shape/drag/line/alpha": 0.4,
"shape/drag/line/style": "SolidLine",
}
CONF.update_defaults(dict(plot=params))
rect_marker.shapeparam.read_config(CONF, "plot", "shape/drag")
rect_marker.shapeparam.update_shape(rect_marker)
rect_marker.setVisible(0)
rect_marker.set_rect(0, 0, np.nan, np.nan)
plot.add_item(rect_marker)
plot.canvas_pointer = True # x-cross marker on
# we hack label_cb for updating legend:
def label_cb(rt, mz):
# passing None here arives as np.nan if you call get_rect later, so we use
# np.nan here:
rect_marker.set_rect(rt, mz, np.nan, np.nan)
return ""
cross_marker = plot.cross_marker
cross_marker.label_cb = label_cb
params = {
"marker/cross/line/color": "#cccccc",
"marker/cross/line/width": 1.5,
"marker/cross/line/alpha": 0.4,
"marker/cross/line/style": "DashLine",
"marker/cross/symbol/marker": "NoSymbol",
"marker/cross/markerstyle": "Cross",
}
CONF.update_defaults(dict(plot=params))
cross_marker.markerparam.read_config(CONF, "plot", "marker/cross")
cross_marker.markerparam.update_marker(cross_marker)
self.cross_marker = cross_marker
self.rect_marker = rect_marker
def __init__(self, c_callback=None, image_plot=None):
super(MzPlotter, self).__init__("m/z", "I")
self.c_callback = c_callback
widget = self.widget
# inject mofified behaviour of wigets plot attribute:
widget.plot.__class__ = MzPlot
widget.plot.register_c_callback(self.handle_c_pressed)
widget.plot.image_plot = image_plot
self.setHalfWindowWidth(0.05)
self.centralMz = None
# todo: refactor as helper
a = QwtScaleDraw()
label = lambda self, x: QwtText("%s" % x)
a.label = new.instancemethod(label, widget.plot, QwtScaleDraw)
widget.plot.setAxisScaleDraw(widget.plot.xBottom, a)
self.pm = PlotManager(widget)
self.pm.add_plot(widget.plot)
self.curve = make.curve([], [], color='b', curvestyle="Sticks")
# inject modified behaviour:
self.curve.__class__ = ModifiedCurveItem
self.widget.plot.add_item(self.curve)
t = self.pm.add_tool(MzSelectionTool)
self.pm.set_default_tool(t)
t.activate()
marker = Marker(label_cb=widget.plot.label_info,
constraint_cb=widget.plot.on_plot)
marker.attach(self.widget.plot)
line = make.segment(0, 0, 0, 0)
line.__class__ = ModifiedSegment
line.setVisible(0)
setupCommonStyle(line, marker)
label = make.info_label("TR", [MzCursorInfo(marker, line)], title=None)
label.labelparam.label = ""
self.marker = marker
self.label = label
self.line = line
def _setup_range_selector(self):
if not self._with_range:
self.range_ = None
return
self.range_ = SnappingRangeSelection(0, 0)
# you have to register item to plot before you can register the
# rtSelectionHandler:
self.plot.add_item(self.range_)
self.range_.SELECTED_RANGE_CHANGED.connect(self._range_selection_handler)
cc = make.info_label("TR", [RangeSelectionInfo(self.range_)], title=None)
setup_label_param(cc, {"label": "", "font.size": 12})
self.plot.add_item(cc)
def __init__(self, parent=None):
super(MzPlottingWidget, self).__init__(parent, xlabel="mz", ylabel="I")
patch_inner_plot_object(self, MzPlot)
self.plot.centralMz = None
def label(self, x):
# label with full precision:
return QwtText(str(x))
a = QwtScaleDraw()
a.label = new.instancemethod(label, self.plot, QwtScaleDraw)
self.plot.setAxisScaleDraw(self.plot.xBottom, a)
self.pm = PlotManager(self)
self.pm.add_plot(self.plot)
self.curve = make_unselectable_curve([], [],
color="b",
curvestyle="Sticks")
self.plot.add_item(self.curve)
t = self.pm.add_tool(MzSelectionTool)
self.pm.set_default_tool(t)
t.activate()
marker = Marker(label_cb=self.plot.label_info,
constraint_cb=self.plot.on_plot)
marker.attach(self.plot)
line = make_measurement_line()
line.setVisible(0)
setupCommonStyle(line, marker)
line.shapeparam.line.color = "#555555"
line.shapeparam.update_shape(line)
label = make.info_label("TR", [MzCursorInfo(marker, line)], title=None)
label.labelparam.label = ""
label.labelparam.font.size = 12
label.labelparam.update_label(label)
self.marker = marker
self.label = label
self.line = line
def _setup_range_selector(self):
if not self._with_range:
self.range_ = None
return
self.range_ = SnappingRangeSelection(0, 0)
# you have to register item to plot before you can register the
# rtSelectionHandler:
self.plot.add_item(self.range_)
self.range_.SELECTED_RANGE_CHANGED.connect(
self._range_selection_handler)
cc = make.info_label("TR", [RangeSelectionInfo(self.range_)],
title=None)
setup_label_param(cc, {"label": "", "font.size": 12})
self.plot.add_item(cc)
def __init__(self, parent=None):
super(MzPlottingWidget, self).__init__(parent, xlabel="mz", ylabel="I")
patch_inner_plot_object(self, MzPlot)
self.plot.centralMz = None
def label(self, x):
# label with full precision:
return QwtText(str(x))
a = QwtScaleDraw()
a.label = new.instancemethod(label, self.plot, QwtScaleDraw)
self.plot.setAxisScaleDraw(self.plot.xBottom, a)
self.pm = PlotManager(self)
self.pm.add_plot(self.plot)
self.curve = make_unselectable_curve([], [], color="b", curvestyle="Sticks")
self.plot.add_item(self.curve)
t = self.pm.add_tool(MzSelectionTool)
self.pm.set_default_tool(t)
t.activate()
marker = Marker(label_cb=self.plot.label_info, constraint_cb=self.plot.on_plot)
marker.attach(self.plot)
line = make_measurement_line()
line.setVisible(0)
setupCommonStyle(line, marker)
line.shapeparam.line.color = "#555555"
line.shapeparam.update_shape(line)
label = make.info_label("TR", [MzCursorInfo(marker, line)], title=None)
label.labelparam.label = ""
label.labelparam.font.size = 12
label.labelparam.update_label(label)
self.marker = marker
self.label = label
self.line = line
def addRangeSelector(self, rtvalues):
self.rtvalues = rtvalues
self.minRTRangeSelected = 0
self.maxRTRangeSelected = 0
range_ = SnappingRangeSelection(self.minRTRangeSelected,\
self.maxRTRangeSelected, self.rtvalues)
setupStyleRangeMarker(range_)
self.range_ = range_
# you have to register item to plot before you can register the
# rtSelectionHandler:
self.widget.plot.add_item(range_)
self.widget.disconnect(range_.plot(), SIG_RANGE_CHANGED,\
self.rangeSelectionHandler)
self.widget.connect(range_.plot(), SIG_RANGE_CHANGED,\
self.rangeSelectionHandler)
cc = make.info_label("TR", [RtRangeSelectionInfo(range_)], title=None)
cc.labelparam.label = ""
self.widget.plot.add_item(cc)
def __init__(self, rangeSelectionCallback = None):
super(RtPlotter, self).__init__("RT", "I")
self.rangeSelectionCallback = rangeSelectionCallback
widget = self.widget
widget.plot.__class__ = RtPlot
# todo: refactor as helper
a = QwtScaleDraw()
# render tic labels in modfied format:
label = lambda self, v: QwtText(formatSeconds(v))
a.label = new.instancemethod(label, widget.plot, QwtScaleDraw)
widget.plot.setAxisScaleDraw(widget.plot.xBottom, a)
#a.label = new.instancemethod(label, widget.plot, QwtScaleDraw)
self.pm = PlotManager(widget)
self.pm.add_plot(widget.plot)
t = self.pm.add_tool(RtSelectionTool)
self.addTool(RtSelectionTool)
self.pm.set_default_tool(t)
marker = Marker(label_cb=self.widget.plot.label_info,\
constraint_cb=self.widget.plot.on_plot)
marker.rts = [0]
setupStyleRtMarker(marker)
marker.attach(self.widget.plot)
self.marker = marker
label = make.info_label("T", [RtCursorInfo(marker)], title=None)
label.labelparam.label = ""
self.label=label
self.minRTRangeSelected = None
self.maxRTRangeSelected = None
def _setup_label(self):
label = make.info_label("T", [self.cursor_info], title=None)
setup_label_param(label, {"label": "", "font.size": 12, "border.color": "#ffffff"})
self.label = label
def make_label(marker, line):
label = make.info_label("TR", [MzCursorInfo(marker, line)], title=None)
label.labelparam.label = ""
return label