def aggregated_statistics(self, request, pk):
""" Retrieve the aggregation percentage for associations meeting filters criteria for this gene. Check the FAQ for details on the filters. """
gene = elastic.load_gene_by_id(pk)
zoom = int(request.query_params.get('zoom', 0))
selected = bool(request.query_params.get('gene', '') == "1")
# last_el = [request.query_params.get('lastel', '')]
filters = _get_filter_from_params(request.query_params)
filters['chr'] = [gene['chr']]
filters['start'] = gene['positions']['gte'] - zoom
filters['end'] = gene['positions']['lte'] + zoom
if selected:
filters['start'] = gene['positions']['gte']
filters['end'] = gene['positions']['lte']
filters['gene_id'] = gene['name']
chr, maf, mac, type, annotations = elastic.get_aggregated_filtered_statistics(
filters)
chr_dict = _get_percentages_from_buckets(chr)
maf_dict = _get_percentages_from_buckets(maf)
mac_dict = _get_percentages_from_buckets(mac)
type_dict = _get_percentages_from_buckets(type)
annotations_dict = _get_percentages_from_buckets(annotations)
return Response({
'chromosomes': chr_dict,
'maf': maf_dict,
'mac': mac_dict,
'types': type_dict,
'annotations': annotations_dict
})
def aggregated_statistics(self, requests):
""" Retrieve general statistics (percentage) about all SNPs. """
chr, maf, mac, type, annotations = elastic.get_aggregated_filtered_statistics({1:1})
chr_dict = _get_percentages_from_buckets(chr)
maf_dict = _get_percentages_from_buckets(maf)
mac_dict = _get_percentages_from_buckets(mac)
type_dict = _get_percentages_from_buckets(type)
annotations_dict = _get_percentages_from_buckets(annotations)
return Response({'chromosomes': chr_dict, 'maf': maf_dict, 'mac': mac_dict, 'types': type_dict, 'annotations': annotations_dict})
def aggregated_statistics(self, request):
""" Retrieve the aggregation percentage for associations meeting filters criteria. Check the FAQ for details on the filters."""
filters = _get_filter_from_params(request.query_params)
chr, maf, mac, type, annotations = elastic.get_aggregated_filtered_statistics(filters)
chr_dict = _get_percentages_from_buckets(chr)
maf_dict = _get_percentages_from_buckets(maf)
mac_dict = _get_percentages_from_buckets(mac)
type_dict = _get_percentages_from_buckets(type)
annotations_dict = _get_percentages_from_buckets(annotations)
return Response({'chromosomes': chr_dict, 'maf': maf_dict, 'mac': mac_dict, 'types': type_dict, 'annotations': annotations_dict})
def aggregated_statistics(self, request, pk):
"""
Retrieve the aggregation statistics of the top assocations for a study and a specific set of filters. Check the FAQ for details on the filters.
"""
filters = _get_filter_from_params(request.query_params)
filters['study_id'] = [pk]
chr, maf, mac, type, annotations = elastic.get_aggregated_filtered_statistics(filters)
chr_dict = _get_percentages_from_buckets(chr)
maf_dict = _get_percentages_from_buckets(maf)
mac_dict = _get_percentages_from_buckets(mac)
type_dict = _get_percentages_from_buckets(type)
annotations_dict = _get_percentages_from_buckets(annotations)
return Response({'chromosomes': chr_dict, 'maf': maf_dict, 'mac': mac_dict, 'types': type_dict, 'annotations': annotations_dict})
