def test_glob_with_absolute_path_does_not_search_relative_to_working_dir(
self, glob_mock
):
workflow = Workflow(working_dir="/some/path")
res = workflow.glob("/other/path/*.fa")
self.assertEqual(res, ["/other/path/A.fa", "/other/path/B.fa"])
glob_mock.assert_called_once_with("/other/path/*.fa")
def test_glob_with_relative_path_searches_relative_to_working_dir(self, glob_mock):
workflow = Workflow(working_dir="/some/path")
workflow.glob("*.fa")
glob_mock.assert_called_once_with("/some/path/*.fa")
def test_glob_with_absolute_path_does_not_search_relative_to_working_dir(self, glob_mock):
workflow = Workflow(working_dir='/some/path')
res = workflow.glob('/other/path/*.fa')
self.assertEqual(res, ['/other/path/A.fa', '/other/path/B.fa'])
glob_mock.assert_called_once_with('/other/path/*.fa')
def test_glob_with_relative_path_searches_relative_to_working_dir(self, glob_mock):
workflow = Workflow(working_dir='/some/path')
workflow.glob('*.fa')
glob_mock.assert_called_once_with('/some/path/*.fa')
def test_glob_with_absolute_path_does_not_search_relative_to_working_dir(
glob_mock):
workflow = Workflow(working_dir="/some/path")
res = workflow.glob("/other/path/*.fa")
assert res == ["/other/path/A.fa", "/other/path/B.fa"]
glob_mock.assert_called_once_with("/other/path/*.fa")
def test_glob_with_relative_path_searches_relative_to_working_dir(glob_mock):
workflow = Workflow(working_dir="/some/path")
workflow.glob("*.fa")
glob_mock.assert_called_once_with("/some/path/*.fa")
