data = np.array(item_pointer)
if verbose:
print "dataset: path=", item_path, " , shape=", data.shape, \
" , dtype=", data.dtype
except:
sys.exit("Path " + path + " is not valid")
# ------------------------------------------------------------------------------
if __name__ == "__main__":
# print "len(sys.argv)=", len(sys.argv)
if len(sys.argv) in [2,3]:
h5_data = sys.argv[1]
verbose = 1
if len(sys.argv) == 3:
verbose = int(sys.argv[2])
# print "verbose=", verbose
else:
sys.exit("\nUsage: h5_dump_summary.py <h5_file_or_dir> \n")
file_list = h5lib.get_file_list(h5_data, "")
# Parse the contexts of entire file, and dump its summary as text
for h5_file in file_list:
print "\nParsing file ", h5_file, "\n"
base_name = os.path.basename(h5_file)
h5_root = h5py.File(h5_file, "r")
path = '/'
parse_h5_item(h5_root, path, verbose)
# If the top hash group is specified, return its keys;
# otherwise, return the keys of all top hash groups
if __name__ == "__main__":
if len(sys.argv) in [2,3,4]:
h5_data = sys.argv[1]
hash_group = ''
if len(sys.argv) >= 3:
hash_group = sys.argv[2]
match_string = ''
if len(sys.argv) == 4:
match_string = sys.argv[3]
else:
sys.exit("\nUsage: h5_get_keys.py <h5_file_or_dir> [ <hash_group> [ match_string ] ] \n")
file_list = h5lib.get_file_list(h5_data, match_string)
for h5_file in file_list:
orig_h5 = h5py.File(h5_file, "r")
top_groups = h5lib.get_child_group_names(orig_h5)
if len(hash_group) > 0:
path_items = [hash_group, "keyNames", "keyNames"]
key_list = h5lib.get_value_pointer_by_path_items(orig_h5, path_items)
print h5_file, ",", hash_group, ": keys=", np.array(key_list).tolist()
elif re.search("meta", h5_file):
key_list = orig_h5.keys()
print h5_file, ": keys=", np.array(key_list).tolist()
for k in key_list:
key_list2 = orig_h5[k].keys()
if len(key_list2) > 1:
print h5_file, ", ", k, ": keys2=", np.array(key_list2).tolist()
if __name__ == "__main__":
if len(sys.argv) >= 1:
h5_data = sys.argv[1]
path_items = []
if len(sys.argv) >= 2:
path_items = sys.argv[2:]
else:
sys.exit(
"\nUsage: h5_get_value_by_path_items.py <h5_file_or_dir> [ <group(s)> ] \n"
)
verbose = 0
# Compile a file list
file_list = h5lib.get_file_list(h5_data, "meta")
print "file_list=", file_list
# Handle files in the file list
for h5_file in file_list:
orig_h5 = h5py.File(h5_file, "r")
# Extract path in a given file
value_pointer = ""
try:
value_pointer = h5lib.get_value_pointer_by_path_items(
orig_h5, path_items)
print h5_file + ": value_pointer.name=", value_pointer.name
keys = value_pointer.keys()
print "group: num_items=", len(keys), " items=" + str(keys)
except:
data = np.array(item_pointer)
if verbose:
print "dataset: path=", item_path, " , shape=", data.shape, \
" , dtype=", data.dtype, " data=", data.tolist()
except:
sys.exit("Path " + path + " is not valid")
# ------------------------------------------------------------------------------
if __name__ == "__main__":
# print "len(sys.argv)=", len(sys.argv)
if len(sys.argv) in [2, 3]:
h5_data = sys.argv[1]
verbose = 1
if len(sys.argv) == 3:
verbose = int(sys.argv[2])
# print "verbose=", verbose
else:
sys.exit("\nUsage: h5_dump_all.py <h5_file_or_dir> \n")
file_list = h5lib.get_file_list(h5_data, "")
# Parse the contexts of entire file, and dump its summary as text
for h5_file in file_list:
print "\nParsing file ", h5_file, "\n"
base_name = os.path.basename(h5_file)
h5_root = h5py.File(h5_file, "r")
path = '/'
parse_h5_item(h5_root, path, verbose)
