def get_sub_network(self, identifiers):
query_vector = util.query_vector(identifiers, self.__kernel.labels)
diffused = self.__kernel.diffuse(query_vector)
filtered = util.filter_sif(self.__network, diffused)
# Return result in CX format.
return util.sif2cx(filtered, scores=diffused)
def test_sif2cx(self):
import hdsubnetfinder.subnetwork.network_util as util
triples = util.read_sif(small_network)
cx = util.sif2cx(triples)
print(json.dumps(cx, indent=4))
self.assertEqual(list, type(cx))
