def test_bad_file_name(self):
"""
Raise error if bad filename given as input.
"""
message = r"File .* not found."
with self.assertRaisesRegex(ValueError, message):
merge_bed('outfile_name', ['/bad/path/to/unexisting/file'])
def test_no_inputs(self):
"""
Raise if no files are given.
"""
message = "At least one element expected in files list, but none found."
with self.assertRaisesRegex(ValueError, message):
merge_bed('outfile_name', [])
def merge_bed_wrapper(data):
"""
TODO
"""
files = []
for file_ in data:
files.append(make_file_from_list(file_))
out_file = get_temp_file_name()
merge_bed(out_file, files)
return make_list_from_file(out_file, fields_separator='\t')
def merge_bed_wrapper(data):
"""
TODO
"""
files = []
for file_ in data:
files.append(make_file_from_list(file_))
out_file = tempfile.NamedTemporaryFile(delete=False).name
return make_list_from_file(merge_bed(out_file, files),
fields_separator='\t')