def MultiFileDialog(title):
#hide/show debug prints
verbose = 0
# Choose image file(s) to open
fc = JFileChooser()
fc.setMultiSelectionEnabled(True)
fc.setDialogTitle(title)
sdir = OpenDialog.getDefaultDirectory()
if sdir!=None:
fdir = File(sdir)
if fdir!=None:
fc.setCurrentDirectory(fdir)
returnVal = fc.showOpenDialog(IJ.getInstance())
if returnVal!=JFileChooser.APPROVE_OPTION:
return
files = fc.getSelectedFiles()
paths = []
for i in range(len(files)):
paths.append(os.path.join(files[i].getParent(), files[i].getName()))
if verbose > 0:
for i in range(len(files)):
path = os.path.join(files[i].getParent(), files[i].getName())
print "Path: " + path
return paths
def MultiFileDialog(title):
#hide/show debug prints
verbose = 0
# Choose image file(s) to open
fc = JFileChooser()
fc.setMultiSelectionEnabled(True)
fc.setDialogTitle(title)
sdir = OpenDialog.getDefaultDirectory()
if sdir != None:
fdir = File(sdir)
if fdir != None:
fc.setCurrentDirectory(fdir)
returnVal = fc.showOpenDialog(IJ.getInstance())
if returnVal != JFileChooser.APPROVE_OPTION:
return
files = fc.getSelectedFiles()
paths = []
for i in range(len(files)):
paths.append(os.path.join(files[i].getParent(), files[i].getName()))
if verbose > 0:
for i in range(len(files)):
path = os.path.join(files[i].getParent(), files[i].getName())
print "Path: " + path
return paths
def FolderDialog(title, folder):
fc = JFileChooser()
fc.setMultiSelectionEnabled(False)
fc.setDialogTitle(title)
fc.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
fc.setAcceptAllFileFilterUsed(False);
if folder ==None:
sdir = OpenDialog.getDefaultDirectory()
else:
sdir = folder
if sdir!=None:
fdir = File(sdir)
if fdir!=None:
fc.setCurrentDirectory(fdir)
returnVal = fc.showOpenDialog(IJ.getInstance())
if returnVal!=JFileChooser.APPROVE_OPTION:
return
folder = fc.getSelectedFile();
path = os.path.join(folder.getParent(), folder.getName())
return path
def getImgRoiDir():
gui = GenericDialogPlus(
"Select directories to process images and ROI sets to apply")
default_dir = OpenDialog.getDefaultDirectory()
gui.addDirectoryField("Choose a iamge folder to be processed", default_dir)
gui.addDirectoryField("Choose a ROI set folder to apply", default_dir)
gui.showDialog()
if gui.wasOKed():
img_dir = gui.getNextString()
if not img_dir.endswith(os.sep):
img_dir = img_dir + os.sep
roi_dir = gui.getNextString()
if not roi_dir.endswith(os.sep):
roi_dir = roi_dir + os.sep
return img_dir, roi_dir
from fiji.util.gui import GenericDialogPlus
from ij.io import OpenDialog
import os
import glob
import re
from ij import IJ
from ij.plugin.frame import RoiManager
from ij.process import ImageStatistics
from ij.measure import Calibration, Measurements
from org.python.core import codecs
from ij.io import DirectoryChooser
DirectoryChooser("").setDefaultDirectory(OpenDialog.getDefaultDirectory())
codecs.setDefaultEncoding('utf-8')
def getImgRoiDir():
gui = GenericDialogPlus(
"Select directories to process images and ROI sets to apply")
default_dir = OpenDialog.getDefaultDirectory()
gui.addDirectoryField("Choose a iamge folder to be processed", default_dir)
gui.addDirectoryField("Choose a ROI set folder to apply", default_dir)
gui.showDialog()
if gui.wasOKed():
img_dir = gui.getNextString()
if not img_dir.endswith(os.sep):