def getTab(outfile, colnames, sample2row):
f = open(outfile, 'w')
iseqlib.writeDocumentStart(f)
myTabHeader(f, colnames)
tab(f, sample2row)
label = ''
captionStr = ''
iseqlib.sidewaystableCloser(f, captionStr, label)
iseqlib.writeDocumentEnd(f)
f.close()
def printTexTab(clones, clone2hits, group2keywords, options, outbasename):
outfile = "%s.tex" %outbasename
f = open(outfile, 'w')
iseqlib.writeDocumentStart(f)
samples = ['AS1', 'AS2', 'AS3', 'AS4', 'AS5', 'H1', 'H2']
myTabHeader(f, samples)
tab(f, clones, clone2hits, group2keywords, options, samples)
label = ''
captionStr = ''
#iseqlib.tableCloser(f, captionStr, label)
iseqlib.sidewaystableCloser(f, captionStr, label)
iseqlib.writeDocumentEnd(f)
f.close()
def printTexTab(clones, clone2hits, group2keywords, options, outbasename):
outfile = "%s.tex" % outbasename
f = open(outfile, "w")
iseqlib.writeDocumentStart(f)
samples = ["AS1", "AS2", "AS3", "AS4", "AS5", "H1", "H2"]
myTabHeader(f, samples)
tab(f, clones, clone2hits, group2keywords, options, samples)
label = ""
captionStr = ""
# iseqlib.tableCloser(f, captionStr, label)
iseqlib.sidewaystableCloser(f, captionStr, label)
iseqlib.writeDocumentEnd(f)
f.close()
#---- main -----
field2index = {'%Cutoff':0, 'Clones1':1, 'Clones2':2, 'Overlap1':3, 'Overlap2':4, '%1overlap2':5, '%2overlap1':6, '%reads1overlap2':7, '%reads2overlap1':8}
cutoff2line = {}
for line in sys.stdin:
line = line.strip('\n')
if len(line) == 0:
continue
if line[0] == '#':
line = line.lstrip('#')
items = line.split('\t')
for i, item in enumerate(items):
field2index[item] = i
else:
items = line.split('\t')
cutoffIndex = field2index['%Cutoff']
cutoff = float(items[cutoffIndex])
cutoff2line[cutoff] = line
iseqlib.writeDocumentStart(sys.stdout)
tabHeader(sys.stdout)
tab(sys.stdout, cutoff2line, field2index)
label=''
captionStr = ''
iseqlib.sidewaystableCloser(sys.stdout, captionStr, label)
iseqlib.writeDocumentEnd(sys.stdout)
