def __init__(self, parent=None):
QtGui.QWidget.__init__(self, parent)
# self.cancelButton = QtGui.QPushButton(self.tr("Cancel"))
self.applyButton = QtGui.QPushButton(self.tr("Apply"))
self.skipButton = QtGui.QPushButton(self.tr("Skip"))
self.doneButton = QtGui.QPushButton(self.tr("Done"))
self.doneButton.setEnabled(False)
buttonLayout = QtGui.QHBoxLayout()
buttonLayout.addWidget(self.skipButton)
buttonLayout.addStretch(1)
buttonLayout.addWidget(self.applyButton)
buttonLayout.addWidget(self.doneButton)
self.setLayout(buttonLayout)
def __init__(self,
label,
fileType,
path=QtCore.QDir.homePath(),
parent=None):
QtGui.QWidget.__init__(self, parent)
self.label = label
self.fileType = fileType
self.path = path
self.label0 = QtGui.QLabel(label)
self.label0.setFixedWidth(80)
self.lineEdit0 = QtGui.QLineEdit()
self.lineEdit0.setReadOnly(True)
self.pushButton0 = QtGui.QPushButton('Browse')
self.layout0 = QtGui.QHBoxLayout()
self.layout0.addWidget(self.label0)
self.layout0.addWidget(self.lineEdit0)
self.layout0.addWidget(self.pushButton0)
self.layout0.setContentsMargins(0, 0, 0, 0)
self.layout0.setSpacing(1)
self.setLayout(self.layout0)
self.connect(self.pushButton0, QtCore.SIGNAL("clicked()"),
self.fileBrowse)
def __init__(self, dProject, dProjRef, parent=None):
QtGui.QWidget.__init__(self, parent)
self.title = QtGui.QLabel(
self.tr("<center><b>REACTIVITY BY REFERENCE</b></center>"))
self.name = "Reactivity by Reference"
self.toolID = 1
self.dProject = dProject
self.dProjOut = deepcopy(dProject)
self.dProjRef = dProjRef
self.isToolApplied = False
### SCALE RX
self.groupBox0 = scaleGroupBox("Scale RX")
### SCALE BG
self.groupBox1 = scaleGroupBox("Scale BG")
### SCALE REACTIVITY
self.groupBox2 = scaleGroupBox("Scale Reactivity")
self.pushButton0 = QtGui.QPushButton('Reactivity')
self.pushButton1 = QtGui.QPushButton('Peak Area')
self.pushButton2 = QtGui.QPushButton('Data')
layout3 = myGridLayout()
layout3.addWidget(self.pushButton0, 1, 0)
layout3.addWidget(self.pushButton1, 1, 1)
layout3.addWidget(self.pushButton2, 1, 3)
self.groupBox3 = QtGui.QGroupBox(self.tr('Select Plot Type'))
self.groupBox3.setLayout(layout3)
### BUTTON BOX
self.buttonBox = ToolButton()
## MAIN LAYOUT
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.title)
mainLayout.addWidget(self.groupBox0)
mainLayout.addWidget(self.groupBox1)
mainLayout.addWidget(self.groupBox2)
mainLayout.addWidget(self.groupBox3)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.isClickedApply = False
def __init__(self, dProject, parent=None):
QtGui.QWidget.__init__(self, parent)
self.title = QtGui.QLabel(self.tr("<center><b>SCALE</b></center>"))
self.name = "Scale"
self.toolID = 1
self.dProject = dProject
self.dOutput = dProject['dData'].copy()
self.label0 = {}
self.doubleSpinBox0 = {}
for key in self.dProject['chKeyRS']:
self.label0[key] = QtGui.QLabel(key)
self.doubleSpinBox0[key] = QtGui.QDoubleSpinBox()
self.doubleSpinBox0[key].setRange(0.01, 100.00)
self.doubleSpinBox0[key].setValue(1.00)
self.doubleSpinBox0[key].setSingleStep(0.01)
self.groupBox1 = QtGui.QGroupBox(self.tr('Enter Scale Factor'))
vbox = QtGui.QGridLayout()
vbox.addWidget(self.label0['RX'], 0, 0)
vbox.addWidget(self.doubleSpinBox0['RX'], 0, 1)
vbox.addWidget(self.label0['BG'], 1, 0)
vbox.addWidget(self.doubleSpinBox0['BG'], 1, 1)
vbox.addWidget(self.label0['RXS1'], 2, 0)
vbox.addWidget(self.doubleSpinBox0['RXS1'], 2, 1)
vbox.addWidget(self.label0['BGS1'], 3, 0)
vbox.addWidget(self.doubleSpinBox0['BGS1'], 3, 1)
if self.dProject['isSeq2']:
vbox.addWidget(self.label0['RXS2'], 4, 0)
vbox.addWidget(self.doubleSpinBox0['RXS2'], 4, 1)
vbox.addWidget(self.label0['BGS2'], 5, 0)
vbox.addWidget(self.doubleSpinBox0['BGS2'], 5, 1)
vbox.setContentsMargins(0, 0, 0, 0)
self.groupBox1.setLayout(vbox)
self.pushButton0 = QtGui.QPushButton('Scale All to BG')
self.connect(self.pushButton0, QtCore.SIGNAL("clicked()"),
self.autoScale)
### Button Box
self.buttonBox = ToolButton()
## Main Layout
self.groupBoxROI = GroupBoxROI(self.dProject)
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.title)
mainLayout.addWidget(self.groupBox1)
mainLayout.addWidget(self.pushButton0)
mainLayout.addWidget(self.groupBoxROI.groupBox)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.isToolApplied = False
def __init__(self, parent=None):
QtGui.QWidget.__init__(self, parent)
# self.cancelButton = QtGui.QPushButton(self.tr("Cancel"))
self.backButton = QtGui.QPushButton(self.tr("< &Back"))
self.nextButton = QtGui.QPushButton(self.tr("Next >"))
self.doneButton = QtGui.QPushButton(self.tr("&Done"))
buttonLayout = QtGui.QHBoxLayout()
buttonLayout.addStretch(1)
# buttonLayout.addWidget(self.cancelButton)
buttonLayout.addWidget(self.backButton)
buttonLayout.addWidget(self.nextButton)
buttonLayout.addWidget(self.doneButton)
self.mainLayout = QtGui.QVBoxLayout()
self.mainLayout.addLayout(buttonLayout)
self.setLayout(self.mainLayout)
def __init__(self, dProject, dProjRef, parent=None):
QtGui.QWidget.__init__(self, parent)
self.title = QtGui.QLabel(
self.tr("<center><b>AUTOMATED ANALYSIS BY REFERENCE</b></center>"))
self.name = "Automated by Reference"
self.toolID = 1
self.dProject = dProject
self.dProjOut = deepcopy(dProject)
self.dProjRef = dProjRef
self.isToolApplied = False
self.checkBox0 = QtGui.QCheckBox("Tools")
self.checkBox1 = QtGui.QCheckBox("Sequence Alignment")
self.checkBox0.setChecked(True)
self.checkBox1.setChecked(True)
self.pushButton0 = QtGui.QPushButton('Reactivity')
self.pushButton1 = QtGui.QPushButton('Peak Area')
self.pushButton2 = QtGui.QPushButton('Data')
layout3 = myGridLayout()
layout3.addWidget(self.checkBox0, 1, 0, 1, 3)
layout3.addWidget(self.checkBox1, 2, 0, 1, 3)
layout3.addWidget(self.pushButton0, 3, 0)
layout3.addWidget(self.pushButton1, 3, 1)
layout3.addWidget(self.pushButton2, 3, 3)
self.groupBox3 = QtGui.QGroupBox(self.tr('Select Plot Type'))
self.groupBox3.setLayout(layout3)
### BUTTON BOX
self.buttonBox = ToolButton()
## MAIN LAYOUT
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.title)
mainLayout.addWidget(self.groupBox3)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
def __init__(self, dProject, parent=None):
QtGui.QWidget.__init__(self, parent)
self.labelTitle = QtGui.QLabel(
self.tr("<center><b>REPORT</b></center>"))
self.name = "Report"
self.toolID = 1
self.dProject = dProject
self.dReport = createDReport(dProject)
for key in self.dReport.keys():
self.dReport[key] = self.dReport[key][::-1]
self.saveTextButton = QtGui.QPushButton("Save as Text")
self.connect(self.saveTextButton, QtCore.SIGNAL('clicked()'),
self.saveTextReport)
self.layout0 = QtGui.QHBoxLayout()
self.layout0.addWidget(self.saveTextButton)
self.layout0.addStretch()
N = len(self.dReport['seqNum'])
self.table = QtGui.QTableWidget()
self.table.setRowCount(N)
self.table.setColumnCount(len(reportKeys))
self.table.setHorizontalHeaderLabels(reportKeys)
self.table.setSelectionBehavior(QtGui.QTableWidget.SelectRows)
self.table.setSelectionMode(QtGui.QTableWidget.SingleSelection)
self.font = QtGui.QFont()
self.font.setPointSize(9)
self.table.setFont(self.font)
for i in range(N):
for key in reportKeys:
if key == 'seqRNA':
item = QtGui.QTableWidgetItem(self.dReport[key][i])
elif key in ['seqNum', 'posSeq', 'posRX', 'posBG']:
item = QtGui.QTableWidgetItem("%d" % self.dReport[key][i])
else:
item = QtGui.QTableWidgetItem("%.2f" %
self.dReport[key][i])
col = reportKeys.index(key)
self.table.setItem(int(i), int(col), item)
self.table.resizeColumnsToContents()
self.table.resizeRowsToContents()
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.labelTitle)
mainLayout.addWidget(self.table)
mainLayout.addLayout(self.layout0)
self.setLayout(mainLayout)
def __init__(self, dProject, parent=None):
QtGui.QWidget.__init__(self, parent)
self.labelTitle = QtGui.QLabel(
self.tr("<center><b>MANUAL SIGNAL ALGINMENT</b></center>"))
self.name = "Manual Signal Alignment"
self.toolID = 1
self.dProject = dProject
self.dProjOut = deepcopy(dProject)
self.linkXR, self.linkXS = np.array([]), np.array([])
self.dataR, self.dataS = np.array([]), np.array([])
self.isToolApplied = False
label0 = QtGui.QLabel('Reference Channel')
self.comboBox0 = QtGui.QComboBox()
self.comboBox0.addItems(dProject['chKeyRS'])
label1 = QtGui.QLabel('Sample Channel')
self.comboBox1 = QtGui.QComboBox()
self.comboBox1.addItems(dProject['chKeyRS'])
self.comboBox1.setCurrentIndex(1)
layout0 = myGridLayout()
layout0.addWidget(label0, 0, 0)
layout0.addWidget(self.comboBox0, 0, 1)
layout0.addWidget(label1, 1, 0)
layout0.addWidget(self.comboBox1, 1, 1)
self.groupBox0 = QtGui.QGroupBox("Select Channels")
self.groupBox0.setLayout(layout0)
self.groupBox0.setCheckable(True)
self.button0 = QtGui.QPushButton('Modify Matched Peaks')
self.button0.setEnabled(False)
self.buttonBox = ToolButton()
self.applyChannel = ApplyChannel(self.dProject)
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.labelTitle)
mainLayout.addWidget(self.groupBox0)
mainLayout.addWidget(self.button0)
mainLayout.addStretch()
mainLayout.addWidget(self.applyChannel.groupBox)
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.refKey = 'RXS1'
self.sampleKey = 'BGS1'
def __init__(self, label, parent=None):
QtGui.QWidget.__init__(self, parent)
type = 'file' # dir, save,
label0 = QtGui.QLabel(label)
self.lineEdit0 = QtGui.QLineEdit()
self.lineEdit0.setReadOnly(True)
self.pushButton0 = QtGui.QPushButton('Browse')
self.connect(self.pushButton0, QtCore.SIGNAL("clicked()"),
self.dirBrowse0)
layout0 = myGridLayout()
layout0.addWidget(label0, 1, 0)
layout0.addWidget(self.lineEdit0, 1, 1)
layout0.addWidget(self.pushButton0, 1, 2)
self.setLayout(layout0)
def __init__(self, dVar, chKeyRS, parent=None):
super(DlgLineProps, self).__init__(parent)
self.setAttribute(QtCore.Qt.WA_DeleteOnClose)
self.setModal(False)
self.labelTitle = QtGui.QLabel(
self.tr("<center><b>CHANNEL ATTRIBUTES</b></center>"))
self.name = "Channel Attributes"
self.toolID = 3
self.dVar = dVar.copy()
self.chKeyRS = chKeyRS
labels = ["Channel", "Color", "Line", "Marker", "Width"]
self.label = {}
self.checkBox0 = {}
self.pushButton0 = {}
self.comboBoxLineStyle = {}
lineStyles = ["solid", "dashed", "dash_dot", "dotted"]
self.lineStyles = ['-', '--', '-.', ':']
self.comboBoxMarkerStyle = {}
markerStyles = [
"none", "point", "circle", "star", "square", "plus", "X", "diamond"
]
self.markerStyles1 = ['', '.', 'o', '*', 's', '+', 'x', 'D']
self.doubleSpinBoxLW = {}
for key in chKeyRS:
self.checkBox0[key] = QtGui.QCheckBox(key)
self.checkBox0[key].setChecked(self.dVar['lineVisible'][key])
self.pushButton0[key] = QtGui.QPushButton()
self.pushButton0[key].setStyleSheet(
"QWidget { background-color: %s }" %
self.dVar['lineColor'][key])
self.comboBoxLineStyle[key] = QtGui.QComboBox()
self.comboBoxLineStyle[key].addItems(lineStyles)
self.comboBoxMarkerStyle[key] = QtGui.QComboBox()
self.comboBoxMarkerStyle[key].addItems(markerStyles)
self.doubleSpinBoxLW[key] = QtGui.QDoubleSpinBox()
self.doubleSpinBoxLW[key].setValue(1.0)
self.doubleSpinBoxLW[key].setSingleStep(0.1)
layout0 = myGridLayout()
for i in range(len(labels)):
self.label[i] = QtGui.QLabel(labels[i])
layout0.addWidget(self.label[i], 0, i)
for key in chKeyRS: #self.dChKeys['RS']:
index = chKeyRS.index(key) + 1
layout0.addWidget(self.checkBox0[key], index, 0)
layout0.addWidget(self.pushButton0[key], index, 1)
layout0.addWidget(self.comboBoxLineStyle[key], index, 2)
layout0.addWidget(self.comboBoxMarkerStyle[key], index, 3)
layout0.addWidget(self.doubleSpinBoxLW[key], index, 4)
self.buttonBox = QtGui.QDialogButtonBox(QtGui.QDialogButtonBox.Apply
| QtGui.QDialogButtonBox.Close)
self.connect(self.pushButton0['RX'], QtCore.SIGNAL("clicked()"),
self.changeColorRX)
self.connect(self.pushButton0['RXS1'], QtCore.SIGNAL("clicked()"),
self.changeColorRXS1)
self.connect(self.pushButton0['BG'], QtCore.SIGNAL("clicked()"),
self.changeColorBG)
self.connect(self.pushButton0['BGS1'], QtCore.SIGNAL("clicked()"),
self.changeColorBGS1)
if 'RXS2' in chKeyRS:
self.connect(self.pushButton0['RXS2'], QtCore.SIGNAL("clicked()"),
self.changeColorRXS2)
if 'BGS2' in chKeyRS:
self.connect(self.pushButton0['BGS2'], QtCore.SIGNAL("clicked()"),
self.changeColorBGS2)
self.connect(self.buttonBox.button(QtGui.QDialogButtonBox.Apply),
QtCore.SIGNAL("clicked()"), self.apply)
self.connect(self.buttonBox, QtCore.SIGNAL("rejected()"), self.reject)
mainLayout = QtGui.QVBoxLayout()
mainLayout.addLayout(layout0)
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.title = "Channel Attributes"
self.setWindowTitle(self.title)
def __init__(self, dProject,dProjRef,parent=None):
QtGui.QWidget.__init__(self, parent)
self.labelTitle = QtGui.QLabel(self.tr("<center><b>REGION OF INTEREST</b></center>"))
self.name="Region of Interest"
self.toolID=1
self.hint = QtGui.QLabel(self.tr("HINT: Press Key 'F' button and click the axes to set From. "
"Press Key 'T' button and click the axes to set To"
))
self.hint.setWordWrap(True)
self.font = QtGui.QFont()
self.font.setPointSize(10)
self.hint.setFont(self.font)
self.dProject=dProject
self.dProjRef=dProjRef
self.dProjOut=deepcopy(dProject)
self.isToolApplied=False
self.roi={}
for key in self.dProject['chKeyRS']:
self.roi[key]=[0,len(self.dProject['dData'][key])]
labelFrom = QtGui.QLabel("From ")
labelTo = QtGui.QLabel("To ")
labelPlus=QtGui.QLabel('(+) Reaction')
self.spinBoxPlusFrom=QtGui.QSpinBox()
self.spinBoxPlusTo=QtGui.QSpinBox()
self.spinBoxPlusFrom.setRange(0,len(self.dProject['dData']['RX']))
self.spinBoxPlusTo.setRange(0,len(self.dProject['dData']['RX']))
self.spinBoxPlusTo.setValue(len(self.dProject['dData']['RX']))
labelMinus=QtGui.QLabel('(-) Reaction')
self.spinBoxMinusFrom=QtGui.QSpinBox()
self.spinBoxMinusTo=QtGui.QSpinBox()
self.spinBoxMinusFrom.setRange(0,len(self.dProject['dData']['BG']))
self.spinBoxMinusTo.setRange(0,len(self.dProject['dData']['BG']))
self.spinBoxMinusTo.setValue(len(self.dProject['dData']['BG']))
layout0=myGridLayout()
layout0.addWidget(labelFrom,0,1)
layout0.addWidget(labelTo,0,2)
layout0.addWidget(labelPlus,1,0)
layout0.addWidget( self.spinBoxPlusFrom,1,1)
layout0.addWidget( self.spinBoxPlusTo,1,2)
layout0.addWidget(labelMinus,2,0)
layout0.addWidget( self.spinBoxMinusFrom,2,1)
layout0.addWidget( self.spinBoxMinusTo,2,2)
self.groupBox0=QtGui.QGroupBox()
self.groupBox0.setLayout(layout0)
self.buttunAuto=QtGui.QPushButton('Auto ROI by Reference')
self.connect(self.buttunAuto,QtCore.SIGNAL("clicked()"),self.autoFindROI)
if not self.dProject['isRef']:
self.buttunAuto.setEnabled(False)
self.buttonBox = ToolButton()
mainLayout=QtGui.QVBoxLayout()
mainLayout.addWidget(self.labelTitle)
mainLayout.addWidget(self.groupBox0)
mainLayout.addWidget(self.buttunAuto)
mainLayout.addWidget(self.hint)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
def __init__(self, dProject, dProjRef, parent=None):
QtGui.QWidget.__init__(self, parent)
self.title = QtGui.QLabel(
self.tr("<center><b>SEQUENCE ALIGNMENT BY REFERENCE</b></center>"))
self.name = "Sequence Alignment by Reference"
self.toolID = 1
self.dProject = dProject
self.dProjRef = dProjRef
self.linkXR, self.linkXS = np.array([]), np.array([])
self.linkYR, self.linkYS = np.array([]), np.array([])
self.dataR, self.dataS = np.array([]), np.array([])
#### BY REFERENCE
self.fileReadRef = DlgSelectFile(
'Ref. Proj.', "Reference Project (*.pyShape *.qushape)",
self.dProject['dir'])
if 'fNameRef' in self.dProject.keys():
self.fileReadRef.lineEdit0.setText(self.dProject['fNameRef'])
self.connect(self.fileReadRef.pushButton0, QtCore.SIGNAL("clicked()"),
self.changeRefFile)
label10 = QtGui.QLabel("Ref. Channel")
self.comboBox10 = QtGui.QComboBox()
self.comboBox10.addItems(chKeysRS)
self.comboBox10.setCurrentIndex(3)
label11 = QtGui.QLabel("Sample Channel")
self.comboBox11 = QtGui.QComboBox()
self.comboBox11.addItems(chKeysRS)
self.comboBox11.setCurrentIndex(3)
layout0 = myGridLayout()
layout0.addWidget(self.fileReadRef, 0, 0, 1, 2)
layout0.addWidget(label10, 1, 0)
layout0.addWidget(self.comboBox10, 1, 1)
layout0.addWidget(label11, 2, 0)
layout0.addWidget(self.comboBox11, 2, 1)
self.groupBox0 = QtGui.QGroupBox(self.tr('Signal Alignment'))
self.groupBox0.setLayout(layout0)
self.groupBox0.setCheckable(True)
labelRX = QtGui.QLabel('Scale Factor for RX')
labelBG = QtGui.QLabel('Scale Factor for BG')
self.spinBoxRX = QtGui.QDoubleSpinBox()
self.spinBoxRX.setRange(0.01, 100.00)
self.spinBoxRX.setValue(1.00)
self.spinBoxRX.setSingleStep(0.01)
self.spinBoxBG = QtGui.QDoubleSpinBox()
self.spinBoxBG.setRange(0.01, 100.00)
self.spinBoxBG.setValue(1.00)
self.spinBoxBG.setSingleStep(0.01)
self.checkBoxScale0 = QtGui.QCheckBox('Scale by windowing')
layout1 = myGridLayout()
layout1.addWidget(labelRX, 0, 0)
layout1.addWidget(self.spinBoxRX, 0, 1)
layout1.addWidget(labelBG, 1, 0)
layout1.addWidget(self.spinBoxBG, 1, 1)
layout1.addWidget(self.checkBoxScale0, 2, 0, 1, 2)
self.groupBox1 = QtGui.QGroupBox(self.tr('Scale RX and BG'))
self.groupBox1.setLayout(layout1)
# self.groupBox1.setCheckable(True)
# self.button0=QtGui.QPushButton('Modify Matched Peaks')
# self.button0.setEnabled(False)
self.button0 = peakMatchModifyButton()
self.button1 = QtGui.QPushButton('Modify Peak Link by Reference')
self.button1.setEnabled(False)
self.button1.setWhatsThis(
self.
tr(" Check the accuracy of linked peaks"
" by C\changing the peak position in the sample RX and BG peaks."
" Press Key 'Shift' button and select a sample peak to change position. "
))
text = self.tr(
"HINT: When the matched peaks are modified; Key 'A' to add a Peak. Key 'D' to delete a Peak. Key 'Shift' to change position. "
)
self.hint = hintLabel(text)
### BUTTON BOX
self.buttonBox = ToolButton()
## MAIN LAYOUT
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.title)
mainLayout.addWidget(self.groupBox0)
mainLayout.addWidget(self.button0)
mainLayout.addWidget(self.button1)
mainLayout.addWidget(self.hint)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.isClickedModifyMatchedPeaks = True
self.isToolApplied = False
self.isMatchedPeaksChanged = True
def __init__(self, dProject, dProjRef, parent=None):
QtGui.QWidget.__init__(self, parent)
self.labelTitle = QtGui.QLabel(
self.tr("<center><b>REACTIVITY</b></center>"))
self.name = "Reactivity"
self.toolID = 1
self.dProject = dProject
self.dProjRef = dProjRef
self.dProjOut = deepcopy(self.dProject)
self.scaleFactor = 1
self.checkBox0 = QtGui.QCheckBox('Scale and Normalize with Reference')
## SCALE
self.groupBox1 = scaleGroupBox("Scale BG")
## NORMALIZATION
label0 = QtGui.QLabel('Outlier')
label1 = QtGui.QLabel('Average')
self.spinBox0 = QtGui.QDoubleSpinBox()
self.spinBox1 = QtGui.QDoubleSpinBox()
self.spinBox0.setRange(0, 9)
self.spinBox1.setRange(0, 15)
self.spinBox0.setSuffix("%")
self.spinBox1.setSuffix("%")
self.spinBox0.setSingleStep(0.25)
self.spinBox1.setSingleStep(0.25)
self.spinBox0.setValue(2.0)
self.spinBox1.setValue(10.0)
self.checkBox1 = QtGui.QCheckBox("Set Negative Value to Zero")
layout2 = myHBoxLayout()
layout2.addWidget(label0)
layout2.addWidget(self.spinBox0)
# layout2.addWidget(label1)
# layout2.addWidget(self.spinBox1)
layout21 = myVBoxLayout()
# layout21.addWidget(self.radioNormCluster)
layout21.addLayout(layout2)
layout21.addWidget(self.checkBox1)
self.groupBox2 = QtGui.QGroupBox(self.tr('Normalization'))
self.groupBox2.setLayout(layout21)
# self.groupBox2.setEnabled(False)
self.radio3to5 = QtGui.QRadioButton("3' to 5'")
self.radio5to3 = QtGui.QRadioButton("5' to 3'")
self.radio3to5.setChecked(True)
self.pushButton0 = QtGui.QPushButton('Reactivity')
self.pushButton1 = QtGui.QPushButton('Peak Area')
self.pushButton2 = QtGui.QPushButton('Data')
layout3 = myGridLayout()
layout3.addWidget(self.radio3to5, 0, 0)
layout3.addWidget(self.radio5to3, 0, 1)
layout3.addWidget(self.pushButton0, 1, 0)
layout3.addWidget(self.pushButton1, 1, 1)
layout3.addWidget(self.pushButton2, 1, 3)
self.groupBox3 = QtGui.QGroupBox(self.tr('Select Plot Type'))
self.groupBox3.setLayout(layout3)
# self.groupBox3.setEnabled(False)
self.buttonBox = ToolButton()
mainLayout = QtGui.QVBoxLayout()
mainLayout.addWidget(self.labelTitle)
mainLayout.addWidget(self.groupBox1)
mainLayout.addWidget(self.groupBox2)
mainLayout.addWidget(self.groupBox3)
mainLayout.addStretch()
mainLayout.addWidget(self.buttonBox)
self.setLayout(mainLayout)
self.isToolApplied = False