def ns_id_from_uri(uri):
sep_ix = uri.rfind('/') + 1
ag_ns = uri[0:sep_ix]
ag_id = uri[sep_ix:]
ag_ns_name = ns_map.get(ag_ns)
if ag_ns_name is None:
raise UnknownNamespaceException('Unknown namespace %s' % ag_ns)
return (ag_ns_name, ag_id)
def ns_id_from_uri(uri):
sep_ix = uri.rfind('/') + 1
ag_ns = uri[0:sep_ix]
ag_id = uri[sep_ix:]
ag_ns_name = ns_map.get(ag_ns)
if ag_ns_name is None:
raise UnknownNamespaceException('Unknown namespace %s' % ag_ns)
return (ag_ns_name, ag_id)
def ns_id_from_uri(uri):
sep_ix = uri.rfind('/') + 1
ag_ns = uri[0:sep_ix]
ag_id = uri[sep_ix:]
# Handle one special case here for HGNC IDs
if ag_id.startswith('HGNC:'):
ag_ns = 'http://identifiers.org/hgnc.symbol/'
ag_id = hgnc_client.get_hgnc_name(db_id[5:])
ag_ns_name = ns_map.get(ag_ns)
if ag_ns_name is None:
raise UnknownNamespaceException('Unknown namespace %s' % ag_ns)
return (ag_ns_name, ag_id)
def _ns_id_from_uri(uri):
(ag_ns, ag_id) = rdflib.namespace.split_uri(uri)
ag_ns_name = ns_map.get(ag_ns)
if ag_ns_name is None:
raise UnknownNamespaceException('Unknown namespace %s' % ag_ns)
return (ag_ns_name, ag_id)
def _ns_id_from_uri(uri):
(ag_ns, ag_id) = rdflib.namespace.split_uri(uri)
ag_ns_name = ns_map.get(ag_ns)
if ag_ns_name is None:
raise UnknownNamespaceException('Unknown namespace %s' % ag_ns)
return (ag_ns_name, ag_id)