def _genericIter(self, cursor, seq_name):
for row in cursor:
start, end, name, strand = row
if strand == '-':
# If strand is reverse, return the reverse complement for the
# coding strand
seq = seqRC(self.seq_map[seq_name][start:end])
else:
seq = self.seq_map[seq_name][start:end]
yield (seq, IterRecord._make(row))
return
def runServer(iterations, num_saved):
start_time = time.time()
best_guesses = accumulator(iterations, num_saved)
time_taken = time.time() - start_time
print 'That took %.2f seconds'%(time_taken)
print '=========== Best guesses ============'
print ' Hits Gene+ Gene-'
for hits, uid, guess in best_guesses:
print '%5d %15s %15s'%(
hits,
util.seqToBaseString(guess),
util.seqToBaseString(seqRC(guess)))
return best_guesses
