def create_parameter_context(self,
name='',
parameter_context=None,
description='',
parameter_type='',
value_encoding='',
unit_of_measure='',
parameter_function_ids=None):
parameter_function_ids = parameter_function_ids or []
res, _ = self.clients.resource_registry.find_resources(
restype=RT.ParameterContext, name=name, id_only=False)
if len(res):
for r in res:
if r.name == name and self._compare_pc(r.parameter_context,
parameter_context):
return r._id
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict,
'parameter_context field is not dictable.')
pc_res = ParameterContextResource(name=name,
parameter_context=parameter_context,
description=description)
pc_res.parameter_type = parameter_type
pc_res.value_encoding = value_encoding
pc_res.unit_of_measure = unit_of_measure
pc_id, ver = self.clients.resource_registry.create(pc_res)
for pfunc_id in parameter_function_ids:
self.read_parameter_function(pfunc_id)
self.clients.resource_registry.create_association(
subject=pc_id,
predicate=PRED.hasParameterFunction,
object=pfunc_id)
return pc_id
def test_append_parameter(self):
# Make a CTDBP Data Product
data_product_id = self.make_ctd_data_product()
dataset_id = self.RR2.find_dataset_id_of_data_product_using_has_dataset(
data_product_id)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
# Throw some data in it
rdt = self.ph.rdt_for_data_product(data_product_id)
rdt['time'] = np.arange(30)
rdt['temp'] = np.arange(30)
rdt['pressure'] = np.arange(30)
self.ph.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(dataset_monitor.wait())
dataset_monitor.event.clear()
# Grab the egg
egg_url = self.egg_url
egg_path = TransformWorker.download_egg(egg_url)
import pkg_resources
pkg_resources.working_set.add_entry(egg_path)
self.addCleanup(os.remove, egg_path)
# Make a parameter function
owner = 'ion_example.add_arrays'
func = 'add_arrays'
arglist = ['a', 'b']
pf = ParameterFunction(name='add_arrays',
function_type=PFT.PYTHON,
owner=owner,
function=func,
args=arglist)
pfunc_id = self.dataset_management.create_parameter_function(pf)
self.addCleanup(self.dataset_management.delete_parameter_function,
pfunc_id)
# Make a context (instance of the function)
context = ParameterContext(name='array_sum',
units="1",
fill_value="-9999",
parameter_function_id=pfunc_id,
parameter_type="function",
value_encoding="float32",
display_name="Array Summation",
parameter_function_map={
'a': 'temp',
'b': 'pressure'
})
#pfunc = DatasetManagementService.get_coverage_function(pf)
#pfunc.param_map = {'a':'temp', 'b':'pressure'}
#ctxt = ParameterContext('array_sum', param_type=ParameterFunctionType(pfunc))
#ctxt_dump = ctxt.dump()
#ctxt_id = self.dataset_management.create_parameter_context('array_sum', ctxt_dump)
ctxt_id = self.dataset_management.create_parameter(context)
self.dataset_management.add_parameter_to_dataset(ctxt_id, dataset_id)
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
np.testing.assert_array_equal(rdt['array_sum'], np.arange(0, 60, 2))
def test_add_parameter(self):
'''
Ensures that adding a parameter properly updates the catalog
'''
data_product_id = self.make_ctd_data_product()
# Grab the XML Catalog entry for this data product and make sure that
# it doesn't already contain the parameter.
entry = self.data_product_management.read_catalog_entry(
data_product_id)
bs = BeautifulSoup(entry)
var_names = []
for var_entry in bs.dataset.find_all('datavariable'):
var_names.append(var_entry.sourcename.get_text())
self.assertNotIn('extra_parameter', var_names)
parameter = ParameterContext(name='extra_parameter',
parameter_type='quantity',
value_encoding='float32',
units='1')
parameter_id = self.dataset_management.create_parameter(parameter)
self.data_product_management.add_parameter_to_data_product(
parameter_id, data_product_id)
entry = self.data_product_management.read_catalog_entry(
data_product_id)
bs = BeautifulSoup(entry)
var_names = []
for var_entry in bs.dataset.find_all('datavariable'):
var_names.append(var_entry.sourcename.get_text())
self.assertIn('extra_parameter', var_names)
def create_parameter_context(self, name='', parameter_context=None, description='', parameter_type='', value_encoding='', unit_of_measure=''):
res, _ = self.clients.resource_registry.find_resources(restype=RT.ParameterContext, name=name, id_only=False)
if len(res):
for r in res:
if r.name == name and self._compare_pc(r.parameter_context, parameter_context):
return r._id
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict, 'parameter_context field is not dictable.')
pc_res = ParameterContextResource(name=name, parameter_context=parameter_context, description=description)
pc_res.parameter_type = parameter_type
pc_res.value_encoding = value_encoding
pc_res.unit_of_measure = unit_of_measure
pc_id, ver = self.clients.resource_registry.create(pc_res)
return pc_id
def create_parameter_context(self, name='', parameter_context=None, description='', parameter_type='', value_encoding='', unit_of_measure='', parameter_function_ids=None):
parameter_function_ids = parameter_function_ids or []
res, _ = self.clients.resource_registry.find_resources(restype=RT.ParameterContext, name=name, id_only=False)
if len(res):
for r in res:
if r.name == name and self._compare_pc(r.parameter_context, parameter_context):
return r._id
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict, 'parameter_context field is not dictable.')
pc_res = ParameterContextResource(name=name, parameter_context=parameter_context, description=description)
pc_res.parameter_type = parameter_type
pc_res.value_encoding = value_encoding
pc_res.unit_of_measure = unit_of_measure
pc_id, ver = self.clients.resource_registry.create(pc_res)
for pfunc_id in parameter_function_ids:
self.read_parameter_function(pfunc_id)
self.clients.resource_registry.create_association(subject=pc_id, predicate=PRED.hasParameterFunction, object=pfunc_id)
return pc_id
def create_contexts(self):
context_ids = []
cond = ParameterContext(name='condictivity_test',
parameter_type='quantity',
value_encoding='float32',
units='1',
fill_value=0)
context_ids.append(self.dataset_management.create_parameter(cond))
pres = ParameterContext(name='pressure_test',
parameter_type='quantity',
value_encoding='float32',
units='Pa',
fill_value=0)
context_ids.append(self.dataset_management.create_parameter(pres))
sal = ParameterContext(name='salinity_test',
parameter_type='quantity',
value_encoding='float32',
units='psu',
fill_value=0)
context_ids.append(self.dataset_management.create_parameter(sal))
temp = ParameterContext(name='temp_test',
parameter_type='quantity',
value_encoding='float32',
units='degree_C',
fill_value=0)
context_ids.append(self.dataset_management.create_parameter(temp))
time_test = ParameterContext(name='time_test',
parameter_type='quantity',
value_encoding='float32',
units='seconds since 1970-01-01',
fill_value=0)
context_ids.append(self.dataset_management.create_parameter(time_test))
return context_ids
def test_add_parameter_to_data_product(self):
#self.preload_ui()
self.test_add_parameter_function()
data_product_id = self.data_product_id
stream_def_id = self.resource_registry.find_objects(
data_product_id, PRED.hasStreamDefinition, id_only=True)[0][0]
pdict_id = self.resource_registry.find_objects(
stream_def_id, PRED.hasParameterDictionary, id_only=True)[0][0]
# Create a new data product htat represents the L1 temp from the ctd simulator
dp = DataProduct(name='CTD Simulator TEMPWAT L1',
category=DataProductTypeEnum.DERIVED)
stream_def_id = self.pubsub_management.create_stream_definition(
name='tempwat_l1',
parameter_dictionary_id=pdict_id,
available_fields=['time', 'temp'])
dp_id = self.data_product_management.create_data_product(
dp,
stream_definition_id=stream_def_id,
parent_data_product_id=data_product_id)
parameter_function = ParameterFunction(name='linear_corr',
function_type=PFT.NUMEXPR,
function='a * x + b',
args=['x', 'a', 'b'])
pf_id = self.dataset_management.create_parameter_function(
parameter_function)
dpd = DataProcessDefinition(name='linear_corr',
description='Linear Correction')
self.data_process_management.create_data_process_definition(dpd, pf_id)
parameter = ParameterContext(name='temperature_corrected',
parameter_type='function',
parameter_function_id=pf_id,
parameter_function_map={
'x': 'temp',
'a': 1.03,
'b': 0.25
},
value_encoding='float32',
units='deg_C',
display_name='Temperature Corrected')
p_id = self.dataset_management.create_parameter(parameter)
# Add it to the parent or parsed data product
self.data_product_management.add_parameter_to_data_product(
p_id, data_product_id)
# Then update the child's stream definition to include it
stream_def = self.pubsub_management.read_stream_definition(
stream_def_id)
stream_def.available_fields.append('temperature_corrected')
self.resource_registry.update(stream_def)
dataset_id = self.RR2.find_dataset_id_of_data_product_using_has_dataset(
data_product_id)
# For some reason, it takes numerous seconds of yielding with gevent for the coverage to actually save...
gevent.sleep(10)
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
np.testing.assert_array_almost_equal(
rdt['temperature_corrected'],
np.arange(30, dtype=np.float32) * 1.03 + 0.25,
decimal=5)
def create_parameter_context(self,
name='',
parameter_context=None,
description='',
reference_urls=None,
parameter_type='',
internal_name='',
value_encoding='',
code_report='',
units='',
fill_value='',
display_name='',
parameter_function_id='',
parameter_function_map='',
standard_name='',
ooi_short_name='',
precision='',
visible=True):
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict,
'parameter_context field is not dictable.')
parameter_context = self.numpy_walk(parameter_context)
pc_res = ParameterContextResource(name=name,
parameter_context=parameter_context,
description=description)
pc_res.reference_urls = reference_urls or []
pc_res.parameter_type = parameter_type
pc_res.internal_name = internal_name or name
pc_res.value_encoding = value_encoding
pc_res.code_report = code_report or ''
pc_res.units = units
pc_res.fill_value = fill_value
pc_res.display_name = display_name
pc_res.parameter_function_id = parameter_function_id
pc_res.parameter_function_map = parameter_function_map
pc_res.standard_name = standard_name
pc_res.ooi_short_name = ooi_short_name
pc_res.precision = precision or '5'
pc_res.visible = visible
pc_id, ver = self.clients.resource_registry.create(pc_res)
if parameter_function_id:
self.read_parameter_function(parameter_function_id)
self.clients.resource_registry.create_association(
subject=pc_id,
predicate=PRED.hasParameterFunction,
object=parameter_function_id)
return pc_id
def create_parameter_context(self, name='', parameter_context=None, description='', reference_urls=None, parameter_type='', internal_name='', value_encoding='', code_report='', units='', fill_value='', display_name='', parameter_function_id='', parameter_function_map='', standard_name='', ooi_short_name='', precision='', visible=True):
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict, 'parameter_context field is not dictable.')
parameter_context = self.numpy_walk(parameter_context)
pc_res = ParameterContextResource(name=name, parameter_context=parameter_context, description=description)
pc_res.reference_urls = reference_urls or []
pc_res.parameter_type = parameter_type
pc_res.internal_name = internal_name or name
pc_res.value_encoding = value_encoding
pc_res.code_report = code_report or ''
pc_res.units = units
pc_res.fill_value = fill_value
pc_res.display_name = display_name
pc_res.parameter_function_id = parameter_function_id
pc_res.parameter_function_map = parameter_function_map
pc_res.standard_name = standard_name
pc_res.ooi_short_name = ooi_short_name
pc_res.precision = precision or '5'
pc_res.visible = visible
pc_id, ver = self.clients.resource_registry.create(pc_res)
if parameter_function_id:
self.read_parameter_function(parameter_function_id)
self.clients.resource_registry.create_association(subject=pc_id, predicate=PRED.hasParameterFunction, object=parameter_function_id)
return pc_id
def create_parameter_context(self, name='', parameter_context=None, description='', reference_urls=None, parameter_type='', internal_name='', value_encoding='', code_report=None, units='', fill_value='', display_name='', parameter_function_id='', parameter_function_map=None, standard_name='', ooi_short_name='', precision=''):
res, _ = self.clients.resource_registry.find_resources(restype=RT.ParameterContext, name=name, id_only=False)
if len(res):
for r in res:
if r.name == name and self._compare_pc(r.parameter_context, parameter_context):
return r._id
validate_true(name, 'Name field may not be empty')
validate_is_instance(parameter_context, dict, 'parameter_context field is not dictable.')
pc_res = ParameterContextResource(name=name, parameter_context=parameter_context, description=description)
pc_res.reference_urls = reference_urls or []
pc_res.parameter_type = parameter_type
pc_res.internal_name = internal_name or name
pc_res.value_encoding = value_encoding
pc_res.code_report = code_report or {}
pc_res.units = units
pc_res.fill_value = fill_value
pc_res.display_name = display_name
pc_res.parameter_function_id = parameter_function_id
pc_res.parameter_function_map = parameter_function_map
pc_res.standard_name = standard_name
pc_res.ooi_short_name = ooi_short_name
pc_res.precision = precision or '5'
pc_id, ver = self.clients.resource_registry.create(pc_res)
if parameter_function_id:
self.read_parameter_function(parameter_function_id)
self.clients.resource_registry.create_association(subject=pc_id, predicate=PRED.hasParameterFunction, object=parameter_function_id)
return pc_id
def create_pfuncs(self):
contexts = {}
funcs = {}
t_ctxt = ParameterContext(name='TIME',
parameter_type='quantity',
value_encoding='float64',
units='seconds since 1900-01-01')
t_ctxt_id = self.dataset_management.create_parameter(t_ctxt)
contexts['TIME'] = t_ctxt_id
lat_ctxt = ParameterContext(name='LAT',
parameter_type="sparse",
value_encoding='float32',
units='degrees_north')
lat_ctxt_id = self.dataset_management.create_parameter(lat_ctxt)
contexts['LAT'] = lat_ctxt_id
lon_ctxt = ParameterContext(name='LON',
parameter_type='sparse',
value_encoding='float32',
units='degrees_east')
lon_ctxt_id = self.dataset_management.create_parameter(lon_ctxt)
contexts['LON'] = lon_ctxt_id
# Independent Parameters
# Temperature - values expected to be the decimal results of conversion from hex
temp_ctxt = ParameterContext(name='TEMPWAT_L0',
parameter_type='quantity',
value_encoding='float32',
units='deg_C')
temp_ctxt_id = self.dataset_management.create_parameter(temp_ctxt)
contexts['TEMPWAT_L0'] = temp_ctxt_id
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext(name='CONDWAT_L0',
parameter_type='quantity',
value_encoding='float32',
units='S m-1')
cond_ctxt_id = self.dataset_management.create_parameter(cond_ctxt)
contexts['CONDWAT_L0'] = cond_ctxt_id
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext(name='PRESWAT_L0',
parameter_type='quantity',
value_encoding='float32',
units='dbar')
press_ctxt_id = self.dataset_management.create_parameter(press_ctxt)
contexts['PRESWAT_L0'] = press_ctxt_id
# Dependent Parameters
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = '(T / 10000) - 10'
expr = ParameterFunction(name='TEMPWAT_L1',
function_type=PFT.NUMEXPR,
function=tl1_func,
args=['T'])
expr_id = self.dataset_management.create_parameter_function(expr)
funcs['TEMPWAT_L1'] = expr_id
tl1_pmap = {'T': 'TEMPWAT_L0'}
tempL1_ctxt = ParameterContext(name='TEMPWAT_L1',
parameter_type='function',
parameter_function_id=expr_id,
parameter_function_map=tl1_pmap,
value_encoding='float32',
units='deg_C')
tempL1_ctxt_id = self.dataset_management.create_parameter(tempL1_ctxt)
contexts['TEMPWAT_L1'] = tempL1_ctxt_id
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = '(C / 100000) - 0.5'
expr = ParameterFunction(name='CONDWAT_L1',
function_type=PFT.NUMEXPR,
function=cl1_func,
args=['C'])
expr_id = self.dataset_management.create_parameter_function(expr)
funcs['CONDWAT_L1'] = expr_id
cl1_pmap = {'C': 'CONDWAT_L0'}
condL1_ctxt = ParameterContext(name='CONDWAT_L1',
parameter_type='function',
parameter_function_id=expr_id,
parameter_function_map=cl1_pmap,
value_encoding='float32',
units='S m-1')
condL1_ctxt_id = self.dataset_management.create_parameter(condL1_ctxt)
contexts['CONDWAT_L1'] = condL1_ctxt_id
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = '(P * p_range / (0.85 * 65536)) - (0.05 * p_range)'
expr = ParameterFunction(name='PRESWAT_L1',function=pl1_func,function_type=PFT.NUMEXPR,args=['P','p_range'])
expr_id = self.dataset_management.create_parameter_function(expr)
funcs['PRESWAT_L1'] = expr_id
pl1_pmap = {'P': 'PRESWAT_L0', 'p_range': 679.34040721}
presL1_ctxt = ParameterContext(name='PRESWAT_L1',
parameter_type='function',
parameter_function_id=expr_id,
parameter_function_map=pl1_pmap,
value_encoding='float32',
units='S m-1')
presL1_ctxt_id = self.dataset_management.create_parameter(presL1_ctxt)
contexts['PRESWAT_L1'] = presL1_ctxt_id
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = 'gsw'
sal_func = 'SP_from_C'
sal_arglist = ['C', 't', 'p']
expr = ParameterFunction(name='PRACSAL',function_type=PFT.PYTHON,function=sal_func,owner=owner,args=sal_arglist)
expr_id = self.dataset_management.create_parameter_function(expr)
funcs['PRACSAL'] = expr_id
c10_f = ParameterFunction(name='c10', function_type=PFT.NUMEXPR, function='C*10', args=['C'])
expr_id = self.dataset_management.create_parameter_function(c10_f)
c10 = ParameterContext(name='c10',
parameter_type='function',
parameter_function_id=expr_id,
parameter_function_map={'C':'CONDWAT_L1'},
value_encoding='float32',
units='1')
c10_id = self.dataset_management.create_parameter(c10)
contexts['c10'] = c10_id
# A magic function that may or may not exist actually forms the line below at runtime.
sal_pmap = {'C': 'c10', 't': 'TEMPWAT_L1', 'p': 'PRESWAT_L1'}
sal_ctxt = ParameterContext(name='PRACSAL',
parameter_type='function',
parameter_function_id=expr_id,
parameter_function_map=sal_pmap,
value_encoding='float32',
units='g kg-1')
sal_ctxt_id = self.dataset_management.create_parameter(sal_ctxt)
contexts['PRACSAL'] = sal_ctxt_id
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = 'gsw'
abs_sal_expr = PythonFunction('abs_sal', owner, 'SA_from_SP', ['PRACSAL', 'PRESWAT_L1', 'LON','LAT'])
cons_temp_expr = PythonFunction('cons_temp', owner, 'CT_from_t', [abs_sal_expr, 'TEMPWAT_L1', 'PRESWAT_L1'])
dens_expr = PythonFunction('DENSITY', owner, 'rho', [abs_sal_expr, cons_temp_expr, 'PRESWAT_L1'])
dens_ctxt = CoverageParameterContext('DENSITY', param_type=ParameterFunctionType(dens_expr), variability=VariabilityEnum.TEMPORAL)
dens_ctxt.uom = 'kg m-3'
dens_ctxt_id = self.dataset_management.create_parameter_context(name='DENSITY', parameter_context=dens_ctxt.dump())
self.addCleanup(self.dataset_management.delete_parameter_context, dens_ctxt_id)
contexts['DENSITY'] = dens_ctxt_id
return contexts, funcs
def test_rdt_param_funcs(self):
param_funcs = {
'identity' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.interpolation',
'function' : 'identity',
'args':['x']
},
'ctd_tempwat' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.ctd_functions',
'function' : 'ctd_sbe37im_tempwat',
'args' : ['t0']
},
'ctd_preswat' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.ctd_functions',
'function' : 'ctd_sbe37im_preswat',
'args' : ["p0", "p_range_psia"]
},
'ctd_condwat' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.ctd_functions',
'function' : 'ctd_sbe37im_condwat',
'args' : ['c0']
},
'ctd_pracsal' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.ctd_functions',
'function' : 'ctd_pracsal',
'args' : ['c', 't', 'p']
},
'ctd_density' : {
'function_type' : PFT.PYTHON,
'owner' : 'ion_functions.data.ctd_functions',
'function' : 'ctd_density',
'args' : ['SP','t','p','lat','lon']
}
}
pfunc_ids = {}
for name, param_def in param_funcs.iteritems():
paramfunc = ParameterFunction(name, **param_def)
pf_id = self.dataset_management.create_parameter_function(paramfunc)
pfunc_ids[name] = pf_id
params = {
'time' : {
'parameter_type' : 'quantity',
'value_encoding' : 'float64',
'units' : 'seconds since 1900-01-01'
},
'temperature_counts' : {
'parameter_type' : 'quantity',
'value_encoding' : 'float32',
'units' : '1'
},
'pressure_counts' : {
'parameter_type' : 'quantity',
'value_encoding' : 'float32',
'units' : '1'
},
'conductivity_counts' : {
'parameter_type' : 'quantity',
'value_encoding' : 'float32',
'units' : '1'
},
'temperature' : {
'parameter_type' : 'function',
'parameter_function_id' : pfunc_ids['ctd_tempwat'],
'parameter_function_map' : { 't0' : 'temperature_counts'},
'value_encoding' : 'float32',
'units' : 'deg_C'
},
'pressure' : {
'parameter_type' : 'function',
'parameter_function_id' : pfunc_ids['ctd_preswat'],
'parameter_function_map' : {'p0' : 'pressure_counts', 'p_range_psia' : 679.34040721},
'value_encoding' : 'float32',
'units' : 'dbar'
},
'conductivity' : {
'parameter_type' : 'function',
'parameter_function_id' : pfunc_ids['ctd_condwat'],
'parameter_function_map' : {'c0' : 'conductivity_counts'},
'value_encoding' : 'float32',
'units' : 'Sm-1'
},
'salinity' : {
'parameter_type' : 'function',
'parameter_function_id' : pfunc_ids['ctd_pracsal'],
'parameter_function_map' : {'c' : 'conductivity', 't' : 'temperature', 'p' : 'pressure'},
'value_encoding' : 'float32',
'units' : '1'
},
'density' : {
'parameter_type' : 'function',
'parameter_function_id' : pfunc_ids['ctd_density'],
'parameter_function_map' : {
'SP' : 'salinity',
't' : 'temperature',
'p' : 'pressure',
'lat' : 'lat',
'lon' : 'lon'
},
'value_encoding' : 'float32',
'units' : 'kg m-1'
},
'lat' : {
'parameter_type' : 'sparse',
'value_encoding' : 'float32',
'units' : 'degrees_north'
},
'lon' : {
'parameter_type' : 'sparse',
'value_encoding' : 'float32',
'units' : 'degrees_east'
}
}
param_dict = {}
for name, param in params.iteritems():
pcontext = ParameterContext(name, **param)
param_id = self.dataset_management.create_parameter(pcontext)
param_dict[name] = param_id
pdict_id = self.dataset_management.create_parameter_dictionary('ctd_test', param_dict.values(), 'time')
stream_def_id = self.pubsub_management.create_stream_definition('ctd_test', parameter_dictionary_id=pdict_id)
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
rdt['time'] = [0]
rdt['temperature_counts'] = [280000]
rdt['conductivity_counts'] = [100000]
rdt['pressure_counts'] = [2789]
rdt['lat'] = [45]
rdt['lon'] = [-71]
np.testing.assert_allclose(rdt['density'], np.array([1001.00543606]))
def initialize_parameters(self, parameters, data_product_id):
for param_name, param_def in parameters.iteritems():
param = ParameterContext(name=param_name, **param_def)
param_id = self.dataset_management.create_parameter(param)
self.data_product_management.add_parameter_to_data_product(
param_id, data_product_id)
