def load(options, env):
assert_docker(options, env)
if not os.path.isfile(options['source']):
click.echo('Please specify a SOURCE argument to an archive file.', err=True)
sys.exit(1)
if env['data_dir'].is_dir():
shutil.rmtree(env['data_dir'])
click.echo('Unpacking archive...')
shutil.unpack_archive(options['source'], env['data_dir'] / 'data')
try:
status = intermine_docker.up(options, env, reuse=True)
except:
intermine_docker.down(options, env)
raise
if status:
# TODO: Once we support building mines other than biotestmine, we should make this text dynamic.
click.echo('Build completed. Visit http://localhost:9999/biotestmine to access your mine.')
else:
click.echo('Build unsuccessful. Please check error logs.')
intermine_docker.down(options, env)
def build(options, env):
assert_docker(options, env)
intermine_docker.up(options, env)
intermine_docker.down(options, env)
intermine_docker.create_archives(options, env)
# upload and download of files is possible only if you have valid access keys
archive.upload_archives(options, env, 's3')
def start(options, env):
assert_docker(options, env)
try:
status = intermine_docker.up(options, env)
except:
intermine_docker.down(options, env)
raise
if status:
# TODO: Once we support building mines other than biotestmine, we should make this text dynamic.
click.echo('Build completed. Visit http://localhost:9999/biotestmine to access your mine.')
else:
click.echo('Build unsuccessful. Please check error logs.')
intermine_docker.down(options, env)
def build(options, env):
assert_docker(options, env)
try:
status = intermine_docker.up(options, env)
except:
intermine_docker.down(options, env)
raise
if status:
intermine_docker.down(options, env)
intermine_docker.create_archives(options, env)
# upload and download of files is possible only if you have valid access keys
#archive.upload_archives(options, env, 's3')
#docker.download_archives(options, env, 's3')
else:
click.echo('Build unsuccessful. Please check error logs.')
intermine_docker.down(options, env)
def stop(options, env):
assert_docker(options, env)
intermine_docker.down(options, env)