def test_ph_multiples(self):
"""
Test ability of ph_calc_phwater to process multiple pH measurements
in a single block.
"""
bout = ph.ph_battery(self.braw)
tout = ph.ph_thermistor(self.traw)
a434 = ph.ph_434_intensity(self.light) # no unit tests, just checking to see if they work
print a434
a578 = ph.ph_578_intensity(self.light)
print a578
# reset calibration values to an array, replicating how ION will pass
# the data when processing blocks of values.
ea434 = np.ones(15) * self.ea434
eb434 = np.ones(15) * self.eb434
ea578 = np.ones(15) * self.ea578
eb578 = np.ones(15) * self.eb578
ind_slp = np.ones(15) * self.ind_slp
ind_off = np.ones(15) * self.ind_off
# test the function
pout = ph.ph_calc_phwater(
self.ref, self.light, tout, ea434, eb434, ea578, eb578, ind_slp, ind_off, self.salinity
)
# test above output where records were processed one at a time
np.testing.assert_array_almost_equal(bout, self.vbatt, 4)
np.testing.assert_array_almost_equal(tout, self.therm, 4)
np.testing.assert_array_almost_equal(pout, self.pH, 4)
def test_ph_multiples(self):
"""
Test ability of ph_calc_phwater to process multiple pH measurements
in a single block.
"""
bout = ph.ph_battery(self.braw)
tout = ph.ph_thermistor(self.traw)
a434 = ph.ph_434_intensity(
self.light) # no unit tests, just checking to see if they work
print a434
a578 = ph.ph_578_intensity(self.light)
print a578
# reset calibration values to an array, replicating how ION will pass
# the data when processing blocks of values.
ea434 = np.ones(15) * self.ea434
eb434 = np.ones(15) * self.eb434
ea578 = np.ones(15) * self.ea578
eb578 = np.ones(15) * self.eb578
ind_slp = np.ones(15) * self.ind_slp
ind_off = np.ones(15) * self.ind_off
# test the function
pout = ph.ph_calc_phwater(self.ref, self.light, tout, ea434, eb434,
ea578, eb578, ind_slp, ind_off,
self.salinity)
# test above output where records were processed one at a time
np.testing.assert_array_almost_equal(bout, self.vbatt, 4)
np.testing.assert_array_almost_equal(tout, self.therm, 4)
np.testing.assert_array_almost_equal(pout, self.pH, 4)
def test_ph_singles(self):
"""
Test ability of ph_calc_phwater to process a single pH measurement, one
measurement at a time.
"""
# determine the number of records and create the output arrays
nRec = self.ref.shape[0]
bout = np.zeros(nRec, dtype=np.float)
tout = np.zeros(nRec, dtype=np.float)
a434 = np.zeros((nRec, 23), dtype=np.float)
a578 = np.zeros((nRec, 23), dtype=np.float)
pout = np.zeros(nRec, dtype=np.float)
# index through the records, calculating pH one record at a time
for iRec in range(nRec):
# compute the battery voltage, final temperature in deg_C and pH,
# record by record.
bout[iRec] = ph.ph_battery(self.braw[iRec])
a434[iRec, :] = ph.ph_434_intensity(self.light[iRec, :])
a578[iRec, :] = ph.ph_578_intensity(self.light[iRec, :])
tout[iRec] = ph.ph_thermistor(self.traw[iRec])
pout[iRec] = ph.ph_calc_phwater(self.ref[iRec, :],
self.light[iRec, :], tout[iRec],
self.ea434, self.eb434, self.ea578,
self.eb578, self.ind_slp,
self.ind_off, self.salinity[iRec])
# test above output where records were processed one at a time
np.testing.assert_array_almost_equal(bout, self.vbatt, 4)
np.testing.assert_array_almost_equal(tout, self.therm, 4)
np.testing.assert_array_almost_equal(pout, self.pH, 4)
def test_ph_singles(self):
"""
Test ability of ph_calc_phwater to process a single pH measurement, one
measurement at a time.
"""
# determine the number of records and create the output arrays
nRec = self.ref.shape[0]
bout = np.zeros(nRec, dtype=np.float)
tout = np.zeros(nRec, dtype=np.float)
a434 = np.zeros((nRec, 23), dtype=np.float)
a578 = np.zeros((nRec, 23), dtype=np.float)
pout = np.zeros(nRec, dtype=np.float)
# index through the records, calculating pH one record at a time
for iRec in range(nRec):
# compute the battery voltage, final temperature in deg_C and pH,
# record by record.
bout[iRec] = ph.ph_battery(self.braw[iRec])
a434[iRec, :] = ph.ph_434_intensity(self.light[iRec, :])
a578[iRec, :] = ph.ph_578_intensity(self.light[iRec, :])
tout[iRec] = ph.ph_thermistor(self.traw[iRec])
pout[iRec] = ph.ph_calc_phwater(
self.ref[iRec, :],
self.light[iRec, :],
tout[iRec],
self.ea434,
self.eb434,
self.ea578,
self.eb578,
self.ind_slp,
self.ind_off,
self.salinity[iRec],
)
# test above output where records were processed one at a time
np.testing.assert_array_almost_equal(bout, self.vbatt, 4)
np.testing.assert_array_almost_equal(tout, self.therm, 4)
np.testing.assert_array_almost_equal(pout, self.pH, 4)
