def run_process(self):
''' Run indexing / integration of imported images '''
cmd.Command.start("Processing {} images".format(len(self.img_objects)))
self.img_list = [[i, len(self.img_objects) + 1, j] for i, j in
enumerate(self.img_objects, 1)]
self.prog_count = 0
self.gs_prog = cmd.ProgressBar(title='PROCESSING')
self.img_objects = parallel_map(iterable=self.img_list,
func=self.proc_wrapper,
callback=self.callback,
processes=self.init.params.n_processors)
cmd.Command.end("Processing {} images -- DONE "
"".format(len(self.img_objects)))
def run_import(self):
''' Import images or image objects '''
if self.init.params.cctbx.selection.select_only.flag_on:
msg = "Reading {} image objects".format(len(self.init.gs_img_objects))
title = 'READING IMAGE OBJECTS'
self.img_list = [[i, len(self.init.gs_img_objects) + 1, j] for i, j in
enumerate(self.init.gs_img_objects, 1)]
else:
msg = "Importing {} images".format(len(self.init.input_list))
title = 'IMPORTING IMAGES'
self.img_list = [[i, len(self.init.input_list) + 1, j] for i, j in
enumerate(self.init.input_list, 1)]
cmd.Command.start(msg)
self.prog_count = 0
self.gs_prog = cmd.ProgressBar(title=title)
self.img_objects = parallel_map(iterable=self.img_list,
func=self.proc_wrapper,
callback=self.callback,
processes=self.init.params.n_processors)
def run_all(self):
''' Run the full processing in multiprocessing mode '''
# Determine whether reading in image objects or images, create image list
if self.init.params.cctbx.selection.select_only.flag_on:
self.img_list = [[i, len(self.init.gs_img_objects) + 1, j]
for i, j in enumerate(self.init.gs_img_objects, 1)
]
else:
self.img_list = [[i, len(self.init.input_list) + 1, j]
for i, j in enumerate(self.init.input_list, 1)]
cmd.Command.start("Processing {} images".format(len(self.img_list)))
# Run processing
self.prog_count = 0
self.gs_prog = cmd.ProgressBar(title='PROCESSING')
self.img_objects = parallel_map(
iterable=self.img_list,
func=self.proc_wrapper,
callback=self.callback,
processes=self.init.params.n_processors)
cmd.Command.end("Processing {} images -- DONE "
"".format(len(self.img_objects)))