def __init__(self,
file_path=None,
file_object=None,
input_string=None,
cif_object=None,
builder=None,
raise_if_errors=True,
strict=True):
assert [file_path, file_object, input_string].count(None) == 2
self.file_path = file_path
if builder is None:
builder = builders.cif_model_builder(cif_object)
else:
assert cif_object is None
self.builder = builder
if file_path is not None:
file_object = smart_open.for_reading(file_path)
else:
file_path = "memory"
if file_object is not None:
input_string = file_object.read()
# check input_string for binary, and abort if necessary
binary_detector = detect_binary_file()
binary_detector.monitor_initial = min(len(input_string),
binary_detector.monitor_initial)
if binary_detector.is_binary_file(block=input_string):
raise CifParserError("Binary file detected, aborting parsing.")
self.parser = ext.fast_reader(builder, input_string, file_path, strict)
if raise_if_errors and len(self.parser.lexer_errors()):
raise CifParserError(self.parser.lexer_errors()[0])
if raise_if_errors and len(self.parser.parser_errors()):
raise CifParserError(self.parser.parser_errors()[0])
def __init__(self,
file_path=None,
file_object=None,
input_string=None,
cif_object=None,
builder=None,
raise_if_errors=True,
strict=True):
assert [file_path, file_object, input_string].count(None) == 2
self.file_path = file_path
if builder is None:
builder = builders.cif_model_builder(cif_object)
else: assert cif_object is None
self.builder = builder
if file_path is not None:
file_object = smart_open.for_reading(file_path)
else:
file_path = "memory"
if file_object is not None:
input_string = file_object.read()
# check input_string for binary, and abort if necessary
binary_detector = detect_binary_file()
binary_detector.monitor_initial = min(
len(input_string), binary_detector.monitor_initial)
if binary_detector.is_binary_file(block=input_string):
raise CifParserError("Binary file detected, aborting parsing.")
self.parser = ext.fast_reader(builder, input_string, file_path, strict)
if raise_if_errors and len(self.parser.lexer_errors()):
raise CifParserError(self.parser.lexer_errors()[0])
if raise_if_errors and len(self.parser.parser_errors()):
raise CifParserError(self.parser.parser_errors()[0])