Exemplos de hy36recode_width_4_all em Python

Exemplo n.º 1

Arquivo: tst_ext.py Projeto: pcxod/cctbx_project

def exercise_hybrid_36():
    hybrid_36.exercise(hy36enc=pdb.hy36encode, hy36dec=pdb.hy36decode)
    for width, s in [(3, "AAA"), (6, "zzzzzz")]:
        try:
            pdb.hy36encode(width=width, value=0)
        except RuntimeError as e:
            assert str(e) == "unsupported width."
        else:
            raise Exception_expected
        try:
            pdb.hy36decode(width=width, s=s)
        except RuntimeError as e:
            assert str(e) == "unsupported width."
        else:
            raise Exception_expected
    ups = user_plus_sys_time()
    n_ok = pdb.hy36recode_width_4_all()
    ups = ups.elapsed()
    print("time hy36recode_width_4_all: %.2f s" \
      " (%.3f micro s per encode-decode cycle)" % (ups, 1.e6*ups/max(1,n_ok)))
    assert n_ok == 999 + 10000 + 2 * 26 * 36**3
    #
    assert pdb.resseq_decode(s=1234) == 1234
    assert pdb.resseq_decode(s="A123") == 11371
    assert pdb.resseq_decode(s="1") == 1
    pdb.resseq_encode(value=1) == "   1"
    pdb.resseq_encode(value=11371) == "A123"
    pdb.resseq_encode(value=1234) == "1234"
    #
    try:
        pdb.resseq_decode(s="18A")
    except ValueError as e:
        assert str(e) == 'invalid residue sequence number: " 18A"'
    else:
        raise Exception_expected

Exemplo n.º 2

 hybrid_36.exercise(hy36enc=pdb.hy36encode, hy36dec=pdb.hy36decode)
 for width, s in [(3, "AAA"), (6, "zzzzzz")]:
     try:
         pdb.hy36encode(width=width, value=0)
     except RuntimeError, e:
         assert str(e) == "unsupported width."
     else:
         raise Exception_expected
     try:
         pdb.hy36decode(width=width, s=s)
     except RuntimeError, e:
         assert str(e) == "unsupported width."
     else:
         raise Exception_expected
 ups = user_plus_sys_time()
 n_ok = pdb.hy36recode_width_4_all()
 ups = ups.elapsed()
 print "time hy36recode_width_4_all: %.2f s" \
   " (%.3f micro s per encode-decode cycle)" % (ups, 1.e6*ups/max(1,n_ok))
 assert n_ok == 999 + 10000 + 2 * 26 * 36**3
 #
 assert pdb.resseq_decode(s=1234) == 1234
 assert pdb.resseq_decode(s="A123") == 11371
 assert pdb.resseq_decode(s="1") == 1
 pdb.resseq_encode(value=1) == "   1"
 pdb.resseq_encode(value=11371) == "A123"
 pdb.resseq_encode(value=1234) == "1234"
 #
 try:
     pdb.resseq_decode(s="18A")
 except ValueError, e:

Exemplo n.º 3

Arquivo: tst_ext.py Projeto: dalekreitler/cctbx-playground

import pickle
import sys, os

def exercise_hybrid_36():
  hybrid_36.exercise(hy36enc=pdb.hy36encode, hy36dec=pdb.hy36decode)
  for width,s in [(3,"AAA"), (6,"zzzzzz")]:
    try: pdb.hy36encode(width=width, value=0)
    except RuntimeError, e:
      assert str(e) == "unsupported width."
    else: raise Exception_expected
    try: pdb.hy36decode(width=width, s=s)
    except RuntimeError, e:
      assert str(e) == "unsupported width."
    else: raise Exception_expected
  ups = user_plus_sys_time()
  n_ok = pdb.hy36recode_width_4_all()
  ups = ups.elapsed()
  print "time hy36recode_width_4_all: %.2f s" \
    " (%.3f micro s per encode-decode cycle)" % (ups, 1.e6*ups/max(1,n_ok))
  assert n_ok == 999+10000+2*26*36**3
  #
  assert pdb.resseq_decode(s=1234) == 1234
  assert pdb.resseq_decode(s="A123") == 11371
  assert pdb.resseq_decode(s="1") == 1
  pdb.resseq_encode(value=1) == "   1"
  pdb.resseq_encode(value=11371) == "A123"
  pdb.resseq_encode(value=1234) == "1234"
  #
  try: pdb.resseq_decode(s="18A")
  except ValueError, e:
    assert str(e) == 'invalid residue sequence number: " 18A"'